Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2005 ATGTGTGGTGGTCCAGAACAGTCCAATTCTGCATCGACTACATCGGCAAACTCACCTAACCCCAAAGACATGAATCATTTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCTTCTGACAATGATGCAGAAGGCTTCAAACGTTTGATGGAGTCTGATTTGTATTCTCTTAACAAGTCTGGTCTCTGGTATGTTCGTCAAAAAGGCTCAAAACAAGTTGTTCATGAGCATAGGACACCCCTGATGGTTGCTGCCACATATGGCTGTGTTGATGTTCTGAAGCTTATACTATCATATCCTGGGGTTGATGTTAATCTCTCATCTGGCACAGACAAGAGCACTGCTCTCCACTGTGCTACTTCTGGTGGATCTGTGAATGTGGTTGATATTGTCGATTTGCTTTTATCTGCTGGTGCTGACCCAAACTCCAAGGATGTCAATGGTGACCGCCCTGTGGATGTCATTTTTGTTCATCCAAAGTTGCAGAAGCAGAATACAAGGTTCAGGCTTGAGGAACTTCTTAACAATCATTCAAATGGATCCATGGATGTGTCCTCTTTACATTTGTCAATCAAAACACCCAATTCAGAGTCACCACCACTTTCTTCATCATTGGAGGATGAATTTCCATCTCCACCCAAGTCTATATCTTCTCCCAAATTTACTGATGGATTTGGAAACTCTACAAAGGAGAAGAAAGAATATCCAATTGATCCGTCACTTCCTGATATCAAGAACAGCATATATGCAACTGATGAGTTTCGGATGTTCTCTTTCAAGGTCAGACCTTGTTCTCGGGCATATTCTCATGATTGGACCGAGTGTCCTTTCGTACACCCAGGGGAGAATGCTCGCAGAAGAGATCCAAGGAAGTTTCACTACAGTTGTGTTCCTTGCCCAGACTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCACATGGAGTTTTTGAGTGTTGGCTACATCCAGCACAGTACCGAACTCGTCTTTGCAAGGATGGAACCAGTTGCAATAGGCGGGTCTGCTTCTTTGCTCACACCAACGAAGAACTGAGGCCATTGTATGTGTCCACTGGATCTGCTGTCCCTTCCCCACGGTCAATTGGATCTGCACCAACTGTAATGGATATGGCTACTGCATTGGGTCTTCTTCCTGGTTCCCCCTCATCAGTGTCTGCTTTGTCTCCATCTCCATTTACTCAATCCATGTCTCCCTCTTCTAATGGCGTTTCTCACTCTTCTGTGAACTGGCAGCAGCCAAATGTGCCGACTCTTCATTTACCAGGAAGTAACCTTCAATCCAGCCGGTTGAGGTCATCTCTGAATGCCAGGGATATGCCTTTAGAGGATTTAAATGTCTTGCCAGACTTTGACAACCAGCCACGGATTTTGAATGATTTGAACTGTTTCTCTCAGCCTCGCCCGAGTGCTGTGTCTGTTAGCCGATCTGGTTGGACCCAAACTCTAACTCCTAACAACCTTGAAGAGCTTTTTTCTTCTGAGATCTCTTCGTCTCCCAGATTTTCCGATCCAGCTGCCAATGCCTTTTCCCCTACCCGCAAATCAACTATGCTAAACCAATTCCAGCAGCAGCAGCAGAACATGTTGTCACCTATTAATACAAGCATTATGTCCCCTAAGAATGTAGATCATCATTTGTTGCAGGCCTCTTTTGGAGTTTCATCCCCGGGAAGGATGTCGCCTAGAAGCACTGAGCCACTATCCCCAATGGGATCTAGGTTCTCTGCCTTTGTACAGCGTGAAAAGCAACAACACCTCCGGACTCTCAGTTCAAGGGAGCTGGGATCTAATGTCCCAAGCTCATTGATCGGATCTCCTGTCAGTTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGTAGATTGGTCGGTTGGTAAGAATGAACTGGGTCAACTGCGAAGGTCATCTTCTTTCGAAATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCACCTGAGATGCTAAAAGAGAAGCTGGCAGTGCCCGGGATGGGTGCTGCGGCATCCGGTGAGGGTCTAACTACTACTAAATCACAATTAGAATCCACTGATCATTCTGTGATAGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG 2178 45.91 MCGGPEQSNSASTTSANSPNPKDMNHLTVDCEDSFYSLLELASDNDAEGFKRLMESDLYSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYPGVDVNLSSGTDKSTALHCATSGGSVNVVDIVDLLLSAGADPNSKDVNGDRPVDVIFVHPKLQKQNTRFRLEELLNNHSNGSMDVSSLHLSIKTPNSESPPLSSSLEDEFPSPPKSISSPKFTDGFGNSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFTQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNVLPDFDNQPRILNDLNCFSQPRPSAVSVSRSGWTQTLTPNNLEELFSSEISSSPRFSDPAANAFSPTRKSTMLNQFQQQQQNMLSPINTSIMSPKNVDHHLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQQHLRTLSSRELGSNVPSSLIGSPVSSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEMGNNGEEPDLSWVQSLVKESPPEMLKEKLAVPGMGAAASGEGLTTTKSQLESTDHSVIGAWLEQMQLDQLVV 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25769045 25771222 + CmPI595203_10g020050.1 Cmu10g2005 427535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2005 725 MobiDBLite consensus disorder prediction 194 241 - -
Cmu10g2005 725 FunFam Zinc finger CCCH domain-containing protein 66 255 323 - -
Cmu10g2005 725 Gene3D - 297 360 - -
Cmu10g2005 725 MobiDBLite consensus disorder prediction 194 229 - -
Cmu10g2005 725 Pfam Ankyrin repeats (3 copies) 45 149 IPR002110 GO:0005515(InterPro)
Cmu10g2005 725 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 322 IPR000571 GO:0046872(InterPro)
Cmu10g2005 725 MobiDBLite consensus disorder prediction 401 423 - -
Cmu10g2005 725 Gene3D - 5 206 IPR036770 -
Cmu10g2005 725 MobiDBLite consensus disorder prediction 1 24 - -
Cmu10g2005 725 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872(InterPro)
Cmu10g2005 725 PRINTS Ankyrin repeat signature 134 148 IPR002110 GO:0005515(InterPro)
Cmu10g2005 725 PRINTS Ankyrin repeat signature 116 131 IPR002110 GO:0005515(InterPro)
Cmu10g2005 725 SUPERFAMILY Ankyrin repeat 36 159 IPR036770 -
Cmu10g2005 725 SMART ANK_2a 80 110 IPR002110 GO:0005515(InterPro)
Cmu10g2005 725 SMART ANK_2a 115 147 IPR002110 GO:0005515(InterPro)
Cmu10g2005 725 ProSiteProfiles Ankyrin repeat profile. 115 150 IPR002110 GO:0005515(InterPro)
Cmu10g2005 725 SMART c3hfinal6 332 355 IPR000571 GO:0046872(InterPro)
Cmu10g2005 725 SMART c3hfinal6 297 323 IPR000571 GO:0046872(InterPro)
Cmu10g2005 725 ProSiteProfiles Ankyrin repeat region circular profile. 115 149 - -
Cmu10g2005 725 PANTHER UNKEMPT FAMILY MEMBER 70 674 IPR045234 -
Cmu10g2005 725 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0475 Cmu-Chr7:5355556 Cmu10g2005 Cmu-Chr10:25769045 2.60E-120 dispersed
Cmu10g2005 Cmu-Chr10:25769045 Cmu10g2450 Cmu-Chr10:31089153 2.40E-209 dispersed
Cmu10g2005 Cmu-Chr10:25769045 Cmu02g1948 Cmu-Chr2:33329621 3.10E-132 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6990 PF12796 Ank_2 1.20E-09 CL0465 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2005 - - - 0.0