Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2009 ATGGCGTTGGCCAGTCGCATCCGATCCACCATCCCTGCCCTCAGTAAGTTTTGGAGATCCGAATCCTCATGCACTCCGCTCTCAAGGACTTATGCCGCTACATCAGGGAAAAATGAAGGAAAAGTGAAGGTGCCTATTGCTTTGTTTGGAGGGTCTGGAAACTATGCCTCTGCTCTGTATCTAGCTGCAGTAAAAGCTAATTCTTTAGAAAAGGTGGAGTCTGAGCTTGTTAACCTTGTTGAGGCTATTAAGAAAAGCCCTACATTTTCTCAGTTCACAATGGACCTGTCAGTTCCAGCGGAAACTAGAGTTAAGGCTATCAACGAAATTTCTGCTGAAGCTAAATTTTCAGACACTGTAAAGAACTTTTTGGTTGTGCTGGCTGAGAATGGGAGGCTGAGATATGTAGATAGCATAGCAAAGAGATTTTTGGAGTTGACCATGGCTCATAAGGGAGAAGTTAAAGCAGTTGTTACAACTGTTATTCCCATTCCAGCACAAGAAGAGAAAGAGTTGAAGGAGACATTGCAAGATATAATTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAGGTATTTGACATGTCCATTAAAACCCGAGCGCGTCAAATGGAGAGGTTCTTGCGCCAACCTGTAACTCTTGATGCATTTCTTGGGGTCTCAAATGCAGAAGAGATAGGATCTAAACTTGCAAACTCTGTTCTTGATCAGCAAGCAATATCTGTTCATGTGACTTTAATATCAAGAATGCTCACAAACTGA 810 42.84 MALASRIRSTIPALSKFWRSESSCTPLSRTYAATSGKNEGKVKVPIALFGGSGNYASALYLAAVKANSLEKVESELVNLVEAIKKSPTFSQFTMDLSVPAETRVKAINEISAEAKFSDTVKNFLVVLAENGRLRYVDSIAKRFLELTMAHKGEVKAVVTTVIPIPAQEEKELKETLQDIIGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPVTLDAFLGVSNAEEIGSKLANSVLDQQAISVHVTLISRMLTN 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25827870 25832896 - CmPI595203_10g020090.1 Cmu10g2009 427539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2009 269 PRINTS ATP synthase delta subunit signature 184 199 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cmu10g2009 269 PRINTS ATP synthase delta subunit signature 121 132 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cmu10g2009 269 PRINTS ATP synthase delta subunit signature 51 70 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cmu10g2009 269 PRINTS ATP synthase delta subunit signature 199 217 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cmu10g2009 269 PRINTS ATP synthase delta subunit signature 132 146 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cmu10g2009 269 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 52 153 IPR026015 -
Cmu10g2009 269 NCBIfam ATP synthase F1 subunit delta 54 223 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cmu10g2009 269 Pfam ATP synthase delta (OSCP) subunit 53 222 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cmu10g2009 269 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 186 205 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Cmu10g2009 269 Gene3D - 51 144 IPR026015 -
Cmu10g2009 269 Hamap ATP synthase subunit delta [atpD]. 47 226 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cmu10g2009 269 PANTHER ATP SYNTHASE DELTA CHAIN 1 227 IPR000711 GO:0000274(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0246 Cmu-Chr8:5458313 Cmu10g2009 Cmu-Chr10:25827870 5.20E-09 transposed
Cmu10g2009 Cmu-Chr10:25827870 Cmu09g0400 Cmu-Chr9:3848214 1.10E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2009 K02137 - rcu:8272168 330.102