Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2032 ATGGAGTTGGGTTTGAGATTAGGAAATGATCCGCCATTTGTATTTCCTCAAAAACCTCCTTCGTCTTCTTCTTCTTCACACCCAACACCACTTGATTTTTCCCTCTCTTTTTCCTCCATTCTTCAACCTCCTCATGAACATCAAACCCACAATCACAAACACCATAACCACCTCCTTCCCCATTCTCTCAACTCTCCTCCGCCGCCCGCCGCCACTTCTCGCCGATCTTCTCAAACTGAAGGATCAGAAGGAGCAGGTGTTTTTACGGAGGTGATAAGTGGAGCGGCTGCGGCGGCGGATGGCGAGGGAGGAGAATTCGGAAGAGGTAACGGAATAGTTTTGTCAACATACAGAAACAGAAATGAAAGGGAAGAAAAAAGAGAGAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGATGAAATTGGGTTGCAGAAAAAAACTGAGGCTTTCAAGACAGCAATCGGCTTTTCTTGAAGAAAGCTTCAAACAACACCATACACTTTACCCTAAGCAAAAGCTAGAAGTTGCAAGAAGACTGAATCTTCTTCCTCGTCAAGTAGAAGTTTGGTTTCAAAATAGACGAGCAAGAACGAAGCTGAAGCAAACAGAAGTAGAGTGTGAATACTTGAAGAAATGTTGCGCAACATTGACCCAACAAAACACAAAGCTTCAAAAGGAACTTCAAGATTTGAGAGCTTTAAAAACCACCCATTCTCTCTTCATGCACTCCCCCGCCACCACTCTCACCTTGTGCGCGTCTTGTGAACGCGCCGCCGCAACCCCCAACTTCCGTTGA 819 44.69 MELGLRLGNDPPFVFPQKPPSSSSSSHPTPLDFSLSFSSILQPPHEHQTHNHKHHNHLLPHSLNSPPPPAATSRRSSQTEGSEGAGVFTEVISGAAAAADGEGGEFGRGNGIVLSTYRNRNEREEKRENEEEEEEEEEEEEEEEEEMKLGCRKKLRLSRQQSAFLEESFKQHHTLYPKQKLEVARRLNLLPRQVEVWFQNRRARTKLKQTEVECEYLKKCCATLTQQNTKLQKELQDLRALKTTHSLFMHSPATTLTLCASCERAAATPNFR 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26100208 26103244 - CmPI595203_10g020320.1 Cmu10g2032 427562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2032 272 ProSiteProfiles 'Homeobox' domain profile. 148 208 IPR001356 GO:0003677(InterPro)
Cmu10g2032 272 MobiDBLite consensus disorder prediction 19 45 - -
Cmu10g2032 272 Pfam Homeobox associated leucine zipper 208 242 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g2032 272 Pfam Homeodomain 152 206 IPR001356 GO:0003677(InterPro)
Cmu10g2032 272 SUPERFAMILY Homeodomain-like 150 217 IPR009057 -
Cmu10g2032 272 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 40 267 IPR050762 -
Cmu10g2032 272 Coils Coil 221 241 - -
Cmu10g2032 272 MobiDBLite consensus disorder prediction 1 84 - -
Cmu10g2032 272 ProSitePatterns 'Homeobox' domain signature. 183 206 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu10g2032 272 SMART halz 208 251 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g2032 272 MobiDBLite consensus disorder prediction 120 147 - -
Cmu10g2032 272 MobiDBLite consensus disorder prediction 68 84 - -
Cmu10g2032 272 MobiDBLite consensus disorder prediction 128 145 - -
Cmu10g2032 272 Gene3D - 156 206 - -
Cmu10g2032 272 SMART HOX_1 150 212 IPR001356 GO:0003677(InterPro)
Cmu10g2032 272 CDD homeodomain 152 209 IPR001356 GO:0003677(InterPro)
Cmu10g2032 272 Coils Coil 114 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g2032 Cmu-Chr10:26100208 Cmu10g2496 Cmu-Chr10:31622757 2.70E-44 dispersed
Cmu10g2032 Cmu-Chr10:26100208 Cmu09g0364 Cmu-Chr9:3512101 1.70E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6993 PF00046 Homeodomain 1.00E-13 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2032 K09338 - csv:101208907 277.33