Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2044 ATGGGCATTGAAACAGTTCAGAATGACGTCATTTTCCGGTCAAAACTGCCGGACATCTACATCCCAAAGCACCTTCCTCTTCACTCTTACTGCCTACACGAAAACGCCGCCAAAATCGGCGACCGGACTTGTCTAATCAACGGCGTCACCGGCGAATCCTTCACCTACAACGACGTCGATCTGTCCTCACGCAAAGTCGCCGCCGGATTAAACAAGCTCGGCATTACAAAAGGCGATGTAATTATGCTGCTCCTCCCAAATTCACCGGAATTCGTCTTCGCTTTCCTCGGCGCGTCATACCTCGGCGCAATTATGACGGCGGCGAATCCTTTCTTCACAGCAGCGGAAATCGCAAAGCAAGCAAAAGGATCAAAATCAAAATTAATCGTAACGCAATCGTCGTATTACGAAAAAGTAAAGGAAATAACAGAGGAATTAGCCGACGTTAAAATCATGACGGTCGATTCTCCACCAGAGGGTTGTTTATGGTTCGGCGATCTAATCAAAGCCGAGGAAGGAGATACTCCGAGGGTGGAAATCGACCCAGACGACGTCGTTGCGCTGCCGTATTCCTCTGGAACAACCGGATTACCGAAAGGCGTGATGCTTACACATAAAAGTTTGGTTACGAGTGTGGCTCAGCAAGTGGATGGAGAAAATCCGAATCTGTATTATGGAAATGAGGATGTGATTTTGTGTGTTTTGCCGTTGTTTCATATTTATTCGCTTAATTCGGTTTTGCTCTGTGGATTACGAGCCGGCGCTGCGATTTTGATTATGCCCAAATTTGAGATCGGTTTGCTTTTGCAATTGGTGGAGAGATACAGAGTGTCCATTGCGCCGATTGTGCCGCCCATTGTTTTGGCTATTGCCAAGTCGCCGGACCTTGAGAAGTATGATCTTTCGTCCATCAGAGTGATCAAATGCGGCGGCGCTCCGCTTGGGAAGGAGCTTGAAGATACCGTGAGAGCCAAGTTTCCTAAGGCCGTGCTCGGCCAGGGATACGGAATGACGGAGGCGGGTCCAGTCCTAACAATGGGATTAGCATTTGCAAAGGAGCCATTTCCGATGAAACCCGGCGCCTGTGGCACCGTCGTGAGAAACGCCGAGATGAAGATCGTCGACACCGAAACCGGCAGCTCATTGCCTCGAAACACGCCGGGAGAGATCTGCATCAGAGGCGATCAAATCATGAAAGGGTATCTGAACAATCCGGAGGCGACGGCGGCGACAATCGACAAGGACGGGTGGTTGCACACCGGTGACATCGGATTCATCGACGACGATGACGAGCTGTTCATCGTGGATCGGTTGAAGGAACTGATAAAGTACAAGGGATTTCAAGTGGCTCCGGCGGAACTTGAAGCTCTGTTGCTGACTCATCCGGTGATTTCGGATGCGGCCGTCGTACCAATGAAAGATGAACAAGCTGGAGAGGTTCCCGTTGCGTTCGTCGTGAAATTGAAGAATTCTGAAGTCACTGAGGATGAAATTAAACTATTTGTTTCAAAACAGGTGGTTTTCTACAAAAGAATCAACCGGGTATTTTTCATAGATGCAATTCCCAAATCGCCCTCAGGCAAGATCTTGAGGAAGGAGTTGAGGGCAAAATTGGCAGCTGGTTTTCCAAATTCTAATTAA 1641 48.75 MGIETVQNDVIFRSKLPDIYIPKHLPLHSYCLHENAAKIGDRTCLINGVTGESFTYNDVDLSSRKVAAGLNKLGITKGDVIMLLLPNSPEFVFAFLGASYLGAIMTAANPFFTAAEIAKQAKGSKSKLIVTQSSYYEKVKEITEELADVKIMTVDSPPEGCLWFGDLIKAEEGDTPRVEIDPDDVVALPYSSGTTGLPKGVMLTHKSLVTSVAQQVDGENPNLYYGNEDVILCVLPLFHIYSLNSVLLCGLRAGAAILIMPKFEIGLLLQLVERYRVSIAPIVPPIVLAIAKSPDLEKYDLSSIRVIKCGGAPLGKELEDTVRAKFPKAVLGQGYGMTEAGPVLTMGLAFAKEPFPMKPGACGTVVRNAEMKIVDTETGSSLPRNTPGEICIRGDQIMKGYLNNPEATAATIDKDGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPVISDAAVVPMKDEQAGEVPVAFVVKLKNSEVTEDEIKLFVSKQVVFYKRINRVFFIDAIPKSPSGKILRKELRAKLAAGFPNSN 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26208718 26213249 - CmPI595203_10g020440.1 Cmu10g2044 427574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2044 546 Gene3D - 439 540 IPR045851 -
Cmu10g2044 546 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Cmu10g2044 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 535 - GO:0016405(PANTHER)
Cmu10g2044 546 CDD 4CL 21 534 - -
Cmu10g2044 546 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Cmu10g2044 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 439 - -
Cmu10g2044 546 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Cmu10g2044 546 Gene3D - 5 438 IPR042099 -
Cmu10g2044 546 Pfam AMP-binding enzyme 33 402 IPR000873 -
Cmu10g2044 546 SUPERFAMILY Acetyl-CoA synthetase-like 19 540 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0770 Cmu-Chr2:8551609 Cmu10g2044 Cmu-Chr10:26208718 9.60E-190 dispersed
Cmu09g0340 Cmu-Chr9:3258736 Cmu10g2044 Cmu-Chr10:26208718 2.00E-224 dispersed
Cmu09g0341 Cmu-Chr9:3268661 Cmu10g2044 Cmu-Chr10:26208718 7.10E-222 dispersed
Cmu10g1435 Cmu-Chr10:8577303 Cmu10g2044 Cmu-Chr10:26208718 3.50E-29 dispersed
Cmu10g2044 Cmu-Chr10:26208718 Cmu11g1269 Cmu-Chr11:24730608 5.90E-200 dispersed
Cmu10g2044 Cmu-Chr10:26208718 Cmu06g1391 Cmu-Chr6:25068067 1.80E-209 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2044 K01904 - csv:101215427 1010.36