Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2053 ATGGCGGATCTCAAAGAGCGGTTGCTTCCACCGAAACCTGCTTCTGCTGTTAATCTTAGGGAGGCAATTAATAATCGACCATCAGCCTCTGGCAGGGTACCTTTTCAAGGTGTGGATGTTCTAGGGCTGAAGAAGCGAGGGCAGGGACTTAGATCTTGGATCCGGGTAGATTCCTCTGGGAACTCCCAGATTATTGAGGTTGATAAGTTCACCATGATGCGTCGTTGTGATCTACCTGCACGTGATTTGCGGTTGCTTGATCCTTTGTTTGTTTACCCTTCAACAATTCTTGGTAGAGAGAAGGCTATTGTAGTCAATCTAGAGCAGATTCGATGTATTATAACAGCTGATGAAGTTTTGCTGTTAAATTCCCTTGATAGTTATGTACTGCAGTATGTGGTAGAGCTACAAAGGCGATTGAAGACTACTGGGGTTGATGAGGTTTGGCAGAATGATGCAAATCATGGTGCTGACTTAAACCGAAGAAGGGGAAGTAGGAATTTTGATAATGTATTTGGAAACACCTCTCCTGATTATTTGCCCTTTGAGTTTAGAGCTTTAGAAGTTGCTTTGGAAGCAGCATGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATCGAAGCATACCCATTGCTAGACGAACTTACGTCAAAAATCAGTACATTAAATTTGGAGCGGGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTACCTCACCGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGTGATCAGTCTGTGAGTGGATACAGATCAATTGATGGAGCGTCTATTTCTGCTCCTGTTTCTCCTGTATCATCTCCACCCGAAACTCGCAGGCTTGAGAAGAGCCTGAGCATTGCCAGGAGCCGGCATGAGAGCATGAGAAGTTCAGAAAGTACCACTGAAAATATAGAGGAGCTCGAGATGCTTCTTGAAGCATATTTTGTTGTCATTGATAGCACCCTGAATAAGTTGACATCGTTGAAAGAATACATTGATGACACAGAAGATTTCATCAACATCCAGTTGGATAATGTACGTAATCAGTTGATTCAGTTTGAGCTACTGCTGACTACCGCAACATTTGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGGATCCCGATGCATTCAAATGGGTTCTTCTAATTACAGGAGTAAGTGGAATTGTCATATTTTCTGCATTTGTTTGGTTTTTCAGATACAAAAGGCTGATGCCACTTTAA 1344 42.49 MADLKERLLPPKPASAVNLREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDANHGADLNRRRGSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVSGYRSIDGASISAPVSPVSSPPETRRLEKSLSIARSRHESMRSSESTTENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGDPDAFKWVLLITGVSGIVIFSAFVWFFRYKRLMPL 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26325819 26329032 + CmPI595203_10g020530.1 Cmu10g2053 427583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2053 447 CDD Mrs2_Mfm1p-like 53 444 IPR039204 -
Cmu10g2053 447 FunFam Magnesium transporter MRS2-1 41 124 - -
Cmu10g2053 447 Pfam Magnesium transporter MRS2-like 326 375 - -
Cmu10g2053 447 Pfam Magnesium transporter MRS2-like 57 270 - -
Cmu10g2053 447 Gene3D Magnesium transport protein CorA, transmembrane region 125 378 - -
Cmu10g2053 447 Gene3D - 41 124 - -
Cmu10g2053 447 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 384 437 IPR045863 -
Cmu10g2053 447 Coils Coil 228 255 - -
Cmu10g2053 447 Gene3D Magnesium transport protein CorA, transmembrane region 385 445 - -
Cmu10g2053 447 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 35 444 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cmu10g2053 447 FunFam Magnesium transporter MRS2-1 385 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2053 K16075 - - csv:101217419 825.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0734 Cmu-Chr2:7715367 Cmu10g2053 Cmu-Chr10:26325819 7.70E-90 dispersed
Cmu06g0647 Cmu-Chr6:7360798 Cmu10g2053 Cmu-Chr10:26325819 4.00E-89 dispersed
Cmu08g0986 Cmu-Chr8:22116828 Cmu10g2053 Cmu-Chr10:26325819 1.60E-106 dispersed
Cmu10g2053 Cmu-Chr10:26325819 Cmu07g0122 Cmu-Chr7:1073170 3.00E-85 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g2053 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Cmu08g0986 . 6 380 MRS2 Gene Family AT1G16010 52.1 2.8e-107 386.0
Cmu06g0647 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.3e-158 556.2
Cmu07g0122 . 788 1159 MRS2 Gene Family AT5G64560 69.2 6.2e-132 467.6
Cmu02g0734 . 14 495 MRS2 Gene Family AT3G19640 64.4 3.0e-155 545.4
Cmu05g1054 . 59 433 MRS2 Gene Family AT3G58970 69.6 6.3e-136 481.1
Cmu02g0026 . 59 386 MRS2 Gene Family AT3G58970 69.9 4.2e-116 415.2
Cmu08g0986 . 6 380 MRS2 Gene Family AT2G03620 68.1 5.5e-137 484.6
Cmu10g2053 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Cmu06g0647 . 1 327 MRS2 Gene Family AT5G09690 76.1 3.9e-127 451.4
Cmu07g0122 . 788 1121 MRS2 Gene Family AT5G09690 64.2 1.1e-108 390.2
Cmu10g2053 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.8e-78 288.1
Cmu06g0647 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.7e-89 326.2
Cmu07g0122 . 823 1081 MRS2 Gene Family AT5G09720 62.0 2.2e-76 282.7
Cmu10g2053 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.4e-201 696.8
Cmu08g0986 . 6 380 MRS2 Gene Family AT1G80900 54.0 5.3e-106 381.7
Cmu01g1362 . 16 424 MRS2 Gene Family AT5G22830 68.4 8.6e-144 507.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004467 2 3 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 42