Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2059 ATGGCGGGTGAGGCGGCACGACCGAGGAATGTTTTATTTGGGAAATACGAAATGGGTCGGCTATTGGGGAAAGGGACCTTTGCGAAGGTCTATTATGGAAGAAACTTGATGACCCACGAGAGTGTTGCCATTAAAGTTATCCTCAAGGACAGGGTGAAGAAAGAGGGGCTTCTTGAGCAAATCCGGCGAGAAATTTCTGTTATGGGGTTGGTTCGTCATCCCCATATTGTGGAATTGAAAGAAGTAATGGCGACGAAATCGAAGGTGTATTTTGTGATGGAGTATGTTAATGGGGGCGAACTGTTTGTGAAATTGTCTCAGCAAGGAAAATTGACTGAAGATGGAGCAAGAAAGTACTTTCAACAACTTATCTCAGCCGTGGACTTTTGCCACAGCCGTGGTGTCTCTCACCGTGATTTGAAGCCTGAAAATCTCCTTCTTGACGAGAATGGGAATTTGAAAGTCTCTGATTTTGGTCTCTCCGCCCTGCCGGAGCAGCTCCGGATCGACGGTTTGCTTCACACACGGTGTGGAACTCCGGCGTATGTGGCGCCTGAGGTACTCAGAAAGAAGGGCTATGACGGTGCTAAGGCGGATATTTGGTCTTGTGGGGTGATTTTGTTTGTGTTGCTTGCTGGGACTCTACCATTTCGAGCTGATAATGCGATGAAGTTGTATAGGAAGATTTTCAAGGCGGAGTTTGAATTTCCTTCATGGTTTTCTTCAGAAGCCAAGGAAATGGTATCTAAGCTTCTGGTTGTTGATCCTCAAAAGAGAGCTTCAATGGTTCAGATAATGCAGAGTCCTTGGTTTCAAAAGGGCTTCACAAAGCCAGTTTCCTTCATTGAGAAAGATGAATTCAACGATGAATTCTCTGAATTGGCAAATCCCAAGTTGTTGTCCTCTTCTCCTCCTTTTTACAATGCCTTTGAGTTCATTTCCTCAATGTCCTCTGGTTTTGACTTGTCTAGTTTGTTTGAAAGCAAGAAGAAACAAGGCTCCATTTTCACTTCGAAATGCTCTGCTTCAGCCATTATAGCCAAGCTTCAGTCTCTGGCCGTGAAGCTCAACTTCAAGGCTACTAATCTGAAGGAGTTCAAGGTGAGGCTGCAGGCCAAGGAGGAAGGGAGGAAAGGGAAGTTGACGGTGACCGCAGAGGTTTACGAGGCGGCTCCGGAGCTGGCAGTGGTTGAGTTCTCAAAGTCGGCCGGCGACACTTTGGAGTACAATAACTTCTGTGAGAAGGATGTGAGGCCTGCATTGAAAGACATAGTTTGGAGCTGGCAAGGAGAGAGGTTTCCTATCCTCCAACATTTTAGTTCTGCAGATGCTGATAGTTTCCTTCATGCAAGGGTGGAGGATTTCCTACGCCTTGATGGAACTTGGGATTGGCCTTCCAATTCTAGAGCACTGGTTGAGCTAGCCTCACAGATTTATTTGATTGTGGTAGAGATGCAAGATCATATGAGTAACCGATGTTATGATATTTCGAGTGACTGTGTTCTTTGTACTGGTGGTATTGAGTCAAGGGATCATTTATTTTTTTGA 1548 45.48 MAGEAARPRNVLFGKYEMGRLLGKGTFAKVYYGRNLMTHESVAIKVILKDRVKKEGLLEQIRREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVNGGELFVKLSQQGKLTEDGARKYFQQLISAVDFCHSRGVSHRDLKPENLLLDENGNLKVSDFGLSALPEQLRIDGLLHTRCGTPAYVAPEVLRKKGYDGAKADIWSCGVILFVLLAGTLPFRADNAMKLYRKIFKAEFEFPSWFSSEAKEMVSKLLVVDPQKRASMVQIMQSPWFQKGFTKPVSFIEKDEFNDEFSELANPKLLSSSPPFYNAFEFISSMSSGFDLSSLFESKKKQGSIFTSKCSASAIIAKLQSLAVKLNFKATNLKEFKVRLQAKEEGRKGKLTVTAEVYEAAPELAVVEFSKSAGDTLEYNNFCEKDVRPALKDIVWSWQGERFPILQHFSSADADSFLHARVEDFLRLDGTWDWPSNSRALVELASQIYLIVVEMQDHMSNRCYDISSDCVLCTGGIESRDHLFF 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26455886 26458755 + CmPI595203_10g020590.1 Cmu10g2059 427589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2059 515 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 419 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cmu10g2059 515 ProSiteProfiles NAF domain profile. 302 327 IPR018451 GO:0007165(InterPro)
Cmu10g2059 515 Pfam NAF domain 304 359 IPR004041 GO:0007165(InterPro)
Cmu10g2059 515 FunFam Non-specific serine/threonine protein kinase 302 426 - -
Cmu10g2059 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2059 515 CDD CIPK_C 308 422 - -
Cmu10g2059 515 FunFam Non-specific serine/threonine protein kinase 9 299 - -
Cmu10g2059 515 ProSitePatterns Protein kinases ATP-binding region signature. 22 54 IPR017441 GO:0005524(InterPro)
Cmu10g2059 515 FunFam Non-specific serine/threonine protein kinase 7 95 - -
Cmu10g2059 515 CDD STKc_SnRK3 15 270 - -
Cmu10g2059 515 Gene3D Transferase(Phosphotransferase) domain 1 7 306 - -
Cmu10g2059 515 SUPERFAMILY Protein kinase-like (PK-like) 12 272 IPR011009 -
Cmu10g2059 515 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2059 515 SMART serkin_6 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2059 515 Gene3D Kinase associated domain 1, KA1 307 427 - -
Cmu10g2059 515 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0229 Cmu-Chr5:1938903 Cmu10g2059 Cmu-Chr10:26455886 1.50E-50 dispersed
Cmu06g1287 Cmu-Chr6:24033478 Cmu10g2059 Cmu-Chr10:26455886 3.70E-133 dispersed
Cmu06g1473 Cmu-Chr6:26005806 Cmu10g2059 Cmu-Chr10:26455886 1.30E-23 dispersed
Cmu08g1125 Cmu-Chr8:23600914 Cmu10g2059 Cmu-Chr10:26455886 1.30E-97 dispersed
Cmu10g1058 Cmu-Chr10:2726444 Cmu10g2059 Cmu-Chr10:26455886 1.10E-48 dispersed
Cmu10g2059 Cmu-Chr10:26455886 Cmu11g0053 Cmu-Chr11:1023803 5.10E-68 dispersed
Cmu11g1784 Cmu-Chr11:29931536 Cmu10g2059 Cmu-Chr10:26455886 1.20E-28 dispersed
Cmu10g2059 Cmu-Chr10:26455886 Cmu05g1673 Cmu-Chr5:26723186 4.70E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75851 PF00069 Pkinase 2.80E-77 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2059 - - - 0.0