Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2083 ATGATGGCTTTTAGCTTCGTTTCTGCATGGAACAAGAGGCGTAGACAAAAAAAGTCTTCTCAATTAGAACATCAAATTGCTAACCCTTGGATCTATAGACCAGTTGAGTTGTGGCAACTTGAGGATCAAACCCTTCAAAGACCTTCCAAAAGACACCATGGATCCGCTGTCTTCACCCTTCGGGAAATGGAAGACGCTACGTGTTCTTTTAGCGATGCTAACTTGCTCGGAAAAGGTGGTTTCGGTCGAGTTTACCATGGCACCTTACAATCTGGAGAGGTTGTAGCAATAAAGAAAATGGAGATGCCAGCATTTAAGGAAGCAGAAGGAGAGCGTGAGTTTCGAGTGGAAGTTGACATTCTCAGCAGATTGGACCATCCAAATCTTGTTTCCTTGATTGGTTATTGTGCTGATGGGAAGCATCGGTTTCTAGTTTATGAATATATGCATAAAGGAAACTTGCAAGATCATTTAAATGGAATTGGAGAAGCAAAGATGGATTGGGAAAGGAGGCTAAAAGTGGCACTTGGAGCAGCAAAGGGACTTGCCTATCTTCATTCAAGTTCAGCTGCTGGGATGCCAATTGTCCATAGAGATTTCAAATCCACAAACATTCTTCTTGACTCCAACTTGGATGCAAAGATATCGGACTTTGGGCTTGCAAAGTTTATGCCGGAAGGACAAGAATCACATGTGACTGCAAGAGTCCTCGGCACATTTGGATACTTTGACCCTGAGTATACCTCCACAGGAAAACTAAGCTTGCAAAGTGATGTATATGCATTTGGAGTGGTTCTTCTTGAGCTGCTGACGGGCCGCCGAGCAGTGGACTTGAACCAAGGCCCAAATGACCAAAACCTTGTCGTACAGGTACGGCATATATTGAATGATCGAAAAAAGTTGCGTAAGGTTATAGATCCAGAAATGAGTCGAAATTCATATACAATGGAATCCATTGCCATCTTTGCAAACTTGGCTTCACGTTGCGTCCGAACAGAAAGTAGTGAAAGGCCAACAATGGCAGAATGTGTAAGGGAGCTCCAAATGATTATCTACACAAAGTTACAAATTCGCAAGGCCTAA 1083 43.03 MMAFSFVSAWNKRRRQKKSSQLEHQIANPWIYRPVELWQLEDQTLQRPSKRHHGSAVFTLREMEDATCSFSDANLLGKGGFGRVYHGTLQSGEVVAIKKMEMPAFKEAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHKGNLQDHLNGIGEAKMDWERRLKVALGAAKGLAYLHSSSAAGMPIVHRDFKSTNILLDSNLDAKISDFGLAKFMPEGQESHVTARVLGTFGYFDPEYTSTGKLSLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVVQVRHILNDRKKLRKVIDPEMSRNSYTMESIAIFANLASRCVRTESSERPTMAECVRELQMIIYTKLQIRKA 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26788910 26793854 + CmPI595203_10g020830.1 Cmu10g2083 427613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2083 360 Pfam Protein kinase domain 73 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2083 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2083 360 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Cmu10g2083 360 SUPERFAMILY Protein kinase-like (PK-like) 57 353 IPR011009 -
Cmu10g2083 360 FunFam receptor-like serine/threonine-protein kinase NCRK 149 359 - -
Cmu10g2083 360 Gene3D Phosphorylase Kinase; domain 1 36 148 - -
Cmu10g2083 360 Gene3D Transferase(Phosphotransferase) domain 1 149 358 - -
Cmu10g2083 360 FunFam serine/threonine-protein kinase PBS1-like 38 148 - -
Cmu10g2083 360 CDD STKc_IRAK 76 348 - -
Cmu10g2083 360 PIRSF ILK 42 359 - -
Cmu10g2083 360 ProSiteProfiles Protein kinase domain profile. 70 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2083 360 PANTHER OS01G0750732 PROTEIN 12 351 IPR050885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g2083 Cmu-Chr10:26788910 Cmu07g0206 Cmu-Chr7:1962706 4.30E-74 dispersed
Cmu10g2083 Cmu-Chr10:26788910 Cmu05g0647 Cmu-Chr5:5533543 1.20E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75852 PF00069 Pkinase 1.50E-50 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2083 - - - 0.0