Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2084 ATGGGGGCGATTTTGGCGGTTTCAGTCGTTCAAACGCTGCTATTTTTGGCTTTCTTCTACTTGGCGGCTTCCTATACTGATTCCCACGATTCGTCGGTTCTTCAATCCTTGAAAGATGGATGGCAAAATACACCACCAAGCTGGGGAACAACAAATGATCCATGTGGAGCTCCCTGGGAAGGAGTGATTTGCAAGAACTCAAGAGTAGTTGCATTGAAATTATCAAGTATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTGAACTGAGATCATTGGACCTTGCAGCCAATCGAGACCTCATTGGTTCAATCTCTTCAGCTCTAGGGAGTTTGTTGAAATTAGAGACCTTGATCCTTTCGACGTGTGGATTTAGTGGCAATATTCCGGAAGAATTGGGCAATCTTACTGAGTTAACCTTCTTGTCTTTATATTCCAACAACTTCACTGGTACTATACCGGCAACTCTGGGAAAACTCTCCAATCTATACTGGCTAGACCTGGCAGATAATCAGTTGACTGGTGCTCTCCCAGTTTCCACTTCCGGATCTTCGGGTTTAGATCGACTTTTTAAGGCTAAACATTTTCATTTCAGCAAAAACCAGTTATCAGGTACCATTCCACCTGAACTTTTTCACTCTGAGATGGTATTATTACACATATTATTTGATGGAAATAATTTTTCTGGGAGTATCCCACCAACATTGGGACTTGTTAAGACCCTTGAGGTTCTTCGACTTGATCGAAATTCTTTAACAGGAAGTGTCCCATCCACTCTAAGCAACCTAATAAATGTGAATGAATTGCATTTAGCCAACAATAAGCTGACAGGTCCACTACCAAACTTAACTCAAATGAGTTCACTAAATTACGTGGATCTTAGTAACAACTCATTTAGCTCATCAATAGCTCCGGAATGGTTCTCAAATCTACAATCTCTCACCACTCTTATTGTTGAATATGGATCAATACGGGGAAATCTGCCAGAAGGAATCTTTAGCTTACCACGTATACAACAAGTAAAACTGAAGAATAATGCATTTAGTGGGACATTATATATGGGTGACAGCATTGGCCAACTGTTGCAGCTAGTCGATTTGCAAAATAACAATATTTCCTCAGTTACCTCTTCGGGATATACTAACGCTTTGATGCTGACAGGAAATCCTGTGTGTGATGCTAATTTCCTCTCAAATACAAACTATTGCCAGCTTCAACAGCAACAAGCAAAACCTTATACTACCAGCCTTGTCAACTGTGGCAGTAAGTCATGTCCTGATGATGAGAAGCTGAACCCTCGGAGTTGTGAGTGTGCCTATCCATATGAAGGGACTTTATACTTTAGAGGACCCTCTTTCCGGGAATTGTCCAATATAACTCTGTTTCACTTATTGGAAATGAGCCTTTTGGAAAAATTCAACCTAACGGCTTCTATTCGAAACCCTTTCTTTAATGCTGACGATTATCTTCAGATACAGCTTGCACTTTTTCCAGCCAATGATAAGTATTTCAACAGGGAAGACATTCAGTGGATTGGTTTTGATTTGCACAGTCAAAATTACAAACCTCCCGACAAGTTTGGGCCATATTACTTCTTTGCGTCTCCTTATCCTTTTTCAGACATCGATGAGGGATCAACTTCAACCAACACTGGGGTGATAATTGGAATAGCTGTTGGCTGTGCCTTTCTTGTTCTCTGCCTCATTGGAATTGGAACATATGCAATTCAACAAAAGAGACGTGCAGAAAAGGCCAAGCCAAATGCTTTCTGGGTGCCAAGTGGAAACGATAGCGGAAGCGCACCACAATTAAAGGGAGCCAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAGATAATTTCTCCACCAGTAATGTGATAGGATCGGGAGGATTTGGCATGGTATACAGAGGAACACTGGTGGATGGAAAAGTAGTTGCAATCAAAAGAGCTCAACAAGGATCAATGCAGGGTGGTCTCGAGTTCAAGACGGAAATTGAGCTGCTTTCACGAGTTCATCACAAGAATCTTCTAGGCCTAGTGGGATTTTGTTCCGAACAAGGAGAACAGATTCTTGTTTATGAGTTCATGCCTAATGGGACACTTAGACAGAGCCTAGCTGGAAAATGTGGTATTTATCTTGATTGGAAGAGAAGGCTTCGTATCGCGCTGGGGTCGGCCAGAGGACTGACTTACTTACACGAGCTTGCTAATCCTCCCATAATTCATAGAGATGTTAAGTCCACCAACATTTTACTAGATGAACGTCTAAATGCAAAGGTTGCTGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGTGTAAAGGGACATGTTTCTACTCAAGTCAAAGGCACATTGGGTTATTTGGATCCTGAATATTACATGAGTCAACAATTGACGGAGAAAAGTGACGTGTACAGTTTTGGAGTAGTTATGTTGGAATTACTAACTGCTAAGCTGCCAATTGAAAAAGGGAAGTACATAGTTCGCGAGAATGATGGAATAAATACAACCTCAACATCAGCATCCTCATCTGCCACAGACTTCGGGACTTCCAAAACTGCTTCTAGACATCCTTATAATGATGCTTTACAGAAAGAGAGTGTCAACAAGAACAGCCAATGA 2637 41.41 MGAILAVSVVQTLLFLAFFYLAASYTDSHDSSVLQSLKDGWQNTPPSWGTTNDPCGAPWEGVICKNSRVVALKLSSMGLKGKLGGDIGGLTELRSLDLAANRDLIGSISSALGSLLKLETLILSTCGFSGNIPEELGNLTELTFLSLYSNNFTGTIPATLGKLSNLYWLDLADNQLTGALPVSTSGSSGLDRLFKAKHFHFSKNQLSGTIPPELFHSEMVLLHILFDGNNFSGSIPPTLGLVKTLEVLRLDRNSLTGSVPSTLSNLINVNELHLANNKLTGPLPNLTQMSSLNYVDLSNNSFSSSIAPEWFSNLQSLTTLIVEYGSIRGNLPEGIFSLPRIQQVKLKNNAFSGTLYMGDSIGQLLQLVDLQNNNISSVTSSGYTNALMLTGNPVCDANFLSNTNYCQLQQQQAKPYTTSLVNCGSKSCPDDEKLNPRSCECAYPYEGTLYFRGPSFRELSNITLFHLLEMSLLEKFNLTASIRNPFFNADDYLQIQLALFPANDKYFNREDIQWIGFDLHSQNYKPPDKFGPYYFFASPYPFSDIDEGSTSTNTGVIIGIAVGCAFLVLCLIGIGTYAIQQKRRAEKAKPNAFWVPSGNDSGSAPQLKGARWFSYDELKKCTDNFSTSNVIGSGGFGMVYRGTLVDGKVVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCSEQGEQILVYEFMPNGTLRQSLAGKCGIYLDWKRRLRIALGSARGLTYLHELANPPIIHRDVKSTNILLDERLNAKVADFGLSKLVSDSVKGHVSTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYIVRENDGINTTSTSASSSATDFGTSKTASRHPYNDALQKESVNKNSQ 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26795691 26802417 - CmPI595203_10g020840.1 Cmu10g2084 427614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2084 878 Gene3D Ribonuclease Inhibitor 27 223 IPR032675 -
Cmu10g2084 878 Pfam Protein tyrosine and serine/threonine kinase 627 826 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2084 878 SMART LRR_typ_2 289 313 IPR003591 -
Cmu10g2084 878 SMART LRR_typ_2 139 162 IPR003591 -
Cmu10g2084 878 SMART LRR_typ_2 361 385 IPR003591 -
Cmu10g2084 878 SMART LRR_typ_2 163 187 IPR003591 -
Cmu10g2084 878 SMART LRR_typ_2 90 115 IPR003591 -
Cmu10g2084 878 SMART LRR_typ_2 242 265 IPR003591 -
Cmu10g2084 878 SMART LRR_typ_2 314 338 IPR003591 -
Cmu10g2084 878 SMART serkin_6 625 873 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2084 878 FunFam Leucine-rich repeat family protein 29 185 - -
Cmu10g2084 878 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2084 878 FunFam Predicted protein 188 409 - -
Cmu10g2084 878 SUPERFAMILY L domain-like 39 303 - -
Cmu10g2084 878 ProSitePatterns Protein kinases ATP-binding region signature. 631 653 IPR017441 GO:0005524(InterPro)
Cmu10g2084 878 Pfam Leucine Rich Repeat 245 266 IPR001611 GO:0005515(InterPro)
Cmu10g2084 878 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cmu10g2084 878 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515(InterPro)
Cmu10g2084 878 Pfam Leucine Rich Repeat 291 314 IPR001611 GO:0005515(InterPro)
Cmu10g2084 878 Gene3D Phosphorylase Kinase; domain 1 597 700 - -
Cmu10g2084 878 MobiDBLite consensus disorder prediction 841 878 - -
Cmu10g2084 878 ProSiteProfiles Protein kinase domain profile. 625 878 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2084 878 Gene3D Ribonuclease Inhibitor 287 410 IPR032675 -
Cmu10g2084 878 CDD STKc_IRAK 631 838 - -
Cmu10g2084 878 PANTHER RECEPTOR-LIKE PROTEIN 55 43 835 - -
Cmu10g2084 878 Gene3D Transferase(Phosphotransferase) domain 1 701 869 - -
Cmu10g2084 878 FunFam Os07g0541700 protein 701 789 - -
Cmu10g2084 878 FunFam Leucine-rich repeat protein kinase family protein 595 700 - -
Cmu10g2084 878 Gene3D Ribonuclease Inhibitor 224 286 IPR032675 -
Cmu10g2084 878 SUPERFAMILY L domain-like 285 394 - -
Cmu10g2084 878 SUPERFAMILY Protein kinase-like (PK-like) 602 828 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0002 Cmu-Chr2:74339 Cmu10g2084 Cmu-Chr10:26795691 7.30E-194 dispersed
Cmu04g0671 Cmu-Chr4:20742044 Cmu10g2084 Cmu-Chr10:26795691 9.10E-88 dispersed
Cmu10g2084 Cmu-Chr10:26795691 Cmu11g0534 Cmu-Chr11:5829654 4.30E-67 dispersed
Cmu10g2084 Cmu-Chr10:26795691 Cmu10g2988 Cmu-Chr10:36062105 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75853 PF07714 PK_Tyr_Ser-Thr 2.10E-43 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2084 - - - 0.0