Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2115 ATGGCTAGTTCAGAAGATATAATTGAAAGCTTTTGGACTGAACGAAATGTTGCAGAAAATGATGGATGTTTTTGGTGTGACATTATCCTTTATCCAGTGTGTCCAATGTTGCTGCCGTTGGTTCTGCTGGTTAACCACACTATGTGGTCATCTGGAATCCAAGCACGAGTGAAGAAACAGGTTCAAGATACAAAGCTTAGCTCCTTTGAGTTGGATTCGTTTGAGATCCCTCGGGGTCAACCTTCTAGAGGAGGAGACATTGAGCTAGGAACAAATGTTCCTACTAGTGGAGGGGATGGCTTGGAGGATTTCTTTAAAAAGGTTCAAGAGATTGAAAAACAGAACGAGAAGCTGGATAGGCTATTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACTAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGGATGGAAAAAGATGTCGATGAAGTTGGAAAAGTTGCACGTTTTGTGAAGATCAAAGTCGAAGAACTTGACAGAGAGAATCTGGCAAATAGGCAGAGGCCCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTTCCTTAAAAAAGAAGTTAAAAGACAAGATGACTGAATTCCAGATTTTACGGGAAAAAATCCATCAAGAGTACCAGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCGCTAGGGCTGACGAAGAGACCATCGAGAAATTAATTGAAACTGGGGACAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGTGCAGTTAGAGAACTGGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTCGACATGGCAGTATTGGTGGATGCGCAAGGGGATATGCTCGACAATATTGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTCCTTAAGCCATGGAATAATGGAGAGAGTCGCCCTCTGCTATCCCTCTCCTTCCCCTGTTTCTCTCAGAAGCCCAAATCCCATCGGCCGCTGCAGTTCCTCTGGCTGAAAGGATACCGCTCTCTAATAGTAGATTGGGAAGATTCTATGGAGTTAGACGCTGTTTCTGTTTCTTTTTATGTTTCTATTACTCTGTCTGATTGGCGCTGCATGTTCTCTTTGGCAGTTTTGATTCAAATGACTGCATTGTCATTTCTGAGGCCAAGAACATCTGCTAAGTTCTCCTTGGTTTTGGGCATTTCCCCGCAAATTTACGAGAAATTAGGCTTATTCTGCCCCAAGATTACCAAATCCTTCCTGAATCCATGTGCCCACCAATCGCATATTCAAAGCTTTTGGAGGGTTTTTCCATTAGGCGTACTGTATTCGACTCAATCCTCAAAACTTCCTGAATATGAAATGCCTACCGTCACCTGGGGAGCTGTTCAAGGGCGCAAAGAAAAACTTGTGTCCCGAGTCATAATCTGTGACTATTTAAAGAGTTTGGGGATTATTCCTGATGAATTAGAACACTTGGAGCTGCCTTCTACAGTTGAAGTCATGAGAGAGCGTGTCGAGTTTCTTCAGAAGTTAGGATTGACTATCGATGACATTAACGAGTTCCCATTAATGCTAGGCTGTAGTGTTCGCAAAAATATAATACCTGTTCTAGGTTACTTGGAGAAAATTGGGATTCCAAGGCCAAAACTTGGAGAATTTATTAAGAATTATCCACAGGTCTTGCATGCCAGTGTCATTGTTGAGCTTGCTCCTGTTGTTAAGCTTCTTCGTGGGCTCGATGTGGAGAAAGAAGATATTGGATATGTCCTACAGAAATACCCTGAGCTTCTGGGTTTCAAGCTTGAGGGGACAATGAGTACATCTGTTGCGTATCTTGTGAGTATAGGTGTTAATCCAAGGGATATTGGACCAATGGTCACACAATACCCGTACTTTTTGGGGATGAGAGTTGGAACCATGATCAAGCCCCTTGTTGAGTTTATTGTTTCTCTAGGTTTGCCAAAGAAGATAGTAGCAAGAATGCTCGAGAAGCGAGCATACATACTCGGTTACGATTTTGAAGAGACTGTGAAACCCAATATAGATTGCTTGCTAAGCTTTGGGATTAGGAAGGAGCTGCTTCCCTCAGTGATTGCACAGTATCCACAAATTCTTGGGTTGCCTTTGAAAGCTAAGTTGTCTTCTCAGCAATTCTTCTTTGACCTAAAGCTCAAGATTGATCCTGCAGGGTTCGCACAAGTGATAGAAAAAATGCCACAGATAGTCAGCCTTCACCAACACGTGATCATTAAACCGGCAGAGTTCTTTCTTGGACGCGGTATACCCTCCTCTGATGTAGCTAAGATGATCATTAAATGTCCCCAGCTAGTCGCTTGTCGTGTAGAACTCATGAAAAACAGTTACTACTTCTTCAAGTCTGAGATGGGCAGGCCAATTAAAGAGCTGGTCGACTTCCCCGAATATTTTACGTACAGTTTGGAATCGAGGATAAAACCGAGGTATCAAAGGCTGCAGAGTAAGGGAATCAGGTGTTCATTAAATTGGTTTCTCAACTGCAGTGATCAAAGATTTGAGGAGAGATTGAAGGGTGAATTCATTGAAACAGAGAGTTTGAGGCCATCATTTTGTATGGGAGGGAGATTAGAGCTACCAAGGAATGAGATTATTGTGTCAGATGATGAGCTTGAGGAGGATGAGTGTGATGAACAACTTCACAGACGCATTGTTTCTCTTTAG 2880 42.88 MASSEDIIESFWTERNVAENDGCFWCDIILYPVCPMLLPLVLLVNHTMWSSGIQARVKKQVQDTKLSSFELDSFEIPRGQPSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKIKVEELDRENLANRQRPGCGKGSGVDRSRTATTLSLKKKLKDKMTEFQILREKIHQEYQEVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGESRPLLSLSFPCFSQKPKSHRPLQFLWLKGYRSLIVDWEDSMELDAVSVSFYVSITLSDWRCMFSLAVLIQMTALSFLRPRTSAKFSLVLGISPQIYEKLGLFCPKITKSFLNPCAHQSHIQSFWRVFPLGVLYSTQSSKLPEYEMPTVTWGAVQGRKEKLVSRVIICDYLKSLGIIPDELEHLELPSTVEVMRERVEFLQKLGLTIDDINEFPLMLGCSVRKNIIPVLGYLEKIGIPRPKLGEFIKNYPQVLHASVIVELAPVVKLLRGLDVEKEDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPLVEFIVSLGLPKKIVARMLEKRAYILGYDFEETVKPNIDCLLSFGIRKELLPSVIAQYPQILGLPLKAKLSSQQFFFDLKLKIDPAGFAQVIEKMPQIVSLHQHVIIKPAEFFLGRGIPSSDVAKMIIKCPQLVACRVELMKNSYYFFKSEMGRPIKELVDFPEYFTYSLESRIKPRYQRLQSKGIRCSLNWFLNCSDQRFEERLKGEFIETESLRPSFCMGGRLELPRNEIIVSDDELEEDECDEQLHRRIVSL 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27095346 27114275 - CmPI595203_10g021150.1 Cmu10g2115 427645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2115 959 Pfam Syntaxin 103 306 IPR006011 GO:0016020(InterPro)
Cmu10g2115 959 Pfam mTERF 598 906 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 FunFam Transcription termination factor mterf4, chloroplastic 562 699 - -
Cmu10g2115 959 FunFam Syntaxin 132 264 364 - -
Cmu10g2115 959 FunFam Transcription termination factor MTERF4, chloroplastic 700 914 - -
Cmu10g2115 959 FunFam Syntaxin 132 96 225 - -
Cmu10g2115 959 Coils Coil 274 294 - -
Cmu10g2115 959 CDD SynN 101 258 IPR006011 GO:0016020(InterPro)
Cmu10g2115 959 SUPERFAMILY t-snare proteins 101 326 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cmu10g2115 959 SMART tSNARE_6 266 333 IPR000727 -
Cmu10g2115 959 Coils Coil 101 135 - -
Cmu10g2115 959 ProSitePatterns Syntaxin / epimorphin family signature. 277 316 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cmu10g2115 959 Gene3D - 263 364 - -
Cmu10g2115 959 SMART mt_12 720 751 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 SMART mt_12 828 859 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 SMART mt_12 860 891 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 SMART mt_12 756 788 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 SMART mt_12 793 823 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 SMART mt_12 576 607 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 SMART mt_12 648 679 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 SMART mt_12 612 643 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 SMART mt_12 684 715 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 Gene3D Transcription termination factor 3, mitochondrial 562 701 IPR038538 -
Cmu10g2115 959 Gene3D Transcription termination factor 3, mitochondrial 702 915 IPR038538 -
Cmu10g2115 959 SMART SynN_4 96 222 IPR006011 GO:0016020(InterPro)
Cmu10g2115 959 PANTHER CGI-12 PROTEIN-RELATED 561 638 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 CDD SNARE_syntaxin1-like 270 332 - -
Cmu10g2115 959 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 271 333 IPR000727 -
Cmu10g2115 959 Pfam SNARE domain 307 359 IPR000727 -
Cmu10g2115 959 Gene3D - 101 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2115 K15031 - - csv:101203314 967.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0534 Cmu-Chr2:5045282 Cmu10g2115 Cmu-Chr10:27095346 1.10E-14 dispersed
Cmu02g0864 Cmu-Chr2:10530186 Cmu10g2115 Cmu-Chr10:27095346 6.20E-47 dispersed
Cmu02g0866 Cmu-Chr2:10572260 Cmu10g2115 Cmu-Chr10:27095346 2.40E-84 dispersed
Cmu03g0679 Cmu-Chr3:970089 Cmu10g2115 Cmu-Chr10:27095346 1.90E-08 dispersed
Cmu03g1250 Cmu-Chr3:7431171 Cmu10g2115 Cmu-Chr10:27095346 2.60E-11 dispersed
Cmu09g2100 Cmu-Chr9:37119384 Cmu10g2115 Cmu-Chr10:27095346 4.10E-49 dispersed
Cmu10g2115 Cmu-Chr10:27095346 Cmu10g2554 Cmu-Chr10:32279926 1.50E-65 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g1223 . 8 382 SNARE and Associated Proteins AT3G24350 53.1 2.1e-84 309.7
Cmu04g0567 . 1 309 SNARE and Associated Proteins AT1G08560 69.6 3.6e-101 365.2
Cmu01g1899 . 431 732 SNARE and Associated Proteins AT2G18260 54.4 9.3e-86 313.9
Cmu10g2554 . 19 279 SNARE and Associated Proteins AT3G11820 80.8 3.4e-115 411.8
Cmu01g1461 . 26 282 SNARE and Associated Proteins AT3G11820 72.8 8.6e-103 370.5
Cmu03g1156 . 31 281 SNARE and Associated Proteins AT3G11820 66.5 1.1e-92 337.0
Cmu10g2115 . 95 349 SNARE and Associated Proteins AT3G11820 52.5 4.8e-69 258.5
Cmu10g2554 . 1 279 SNARE and Associated Proteins AT3G52400 63.9 5.7e-92 334.7
Cmu01g1461 . 33 282 SNARE and Associated Proteins AT3G52400 64.8 2.3e-85 312.8
Cmu03g1156 . 1 281 SNARE and Associated Proteins AT3G52400 56.4 3.5e-81 298.9
Cmu10g2115 . 97 349 SNARE and Associated Proteins AT3G52400 50.6 5.2e-61 231.9
Cmu03g1156 . 1 299 SNARE and Associated Proteins AT4G03330 69.2 3.0e-108 388.7
Cmu10g2554 . 1 279 SNARE and Associated Proteins AT4G03330 58.2 1.5e-83 306.6
Cmu01g1461 . 1 297 SNARE and Associated Proteins AT4G03330 52.6 3.8e-79 292.0
Cmu10g2115 . 86 349 SNARE and Associated Proteins AT4G03330 53.8 1.1e-67 253.8
Cmu03g1156 . 1 299 SNARE and Associated Proteins AT1G61290 79.3 9.8e-128 453.4
Cmu10g2554 . 1 279 SNARE and Associated Proteins AT1G61290 63.1 4.3e-91 331.6
Cmu01g1461 . 1 297 SNARE and Associated Proteins AT1G61290 56.6 1.6e-85 313.2
Cmu10g2115 . 101 349 SNARE and Associated Proteins AT1G61290 50.6 1.9e-62 236.5
Cmu03g1156 . 1 299 SNARE and Associated Proteins AT1G11250 78.3 1.7e-124 442.6
Cmu10g2554 . 1 279 SNARE and Associated Proteins AT1G11250 62.7 3.4e-93 338.6
Cmu01g1461 . 1 292 SNARE and Associated Proteins AT1G11250 57.2 1.1e-86 317.0
Cmu10g2115 . 85 349 SNARE and Associated Proteins AT1G11250 50.6 4.7e-66 248.4
Cmu10g2115 . 73 368 SNARE and Associated Proteins AT3G03800 74.0 2.9e-111 398.7
Cmu02g0866 . 41 327 SNARE and Associated Proteins AT3G03800 55.6 2.0e-80 296.2
Cmu10g2115 . 73 267 SNARE and Associated Proteins AT5G08080 79.1 1.2e-77 286.6
Cmu02g0866 . 27 227 SNARE and Associated Proteins AT5G08080 58.7 1.3e-52 203.4
Cmu10g0988 . 1 253 SNARE and Associated Proteins AT5G16830 59.5 2.0e-74 276.2
Cmu10g0988 . 1 253 SNARE and Associated Proteins AT5G46860 66.0 9.7e-79 290.4
Cmu10g0988 . 1 242 SNARE and Associated Proteins AT4G17730 63.2 4.5e-73 271.6
Cmu10g0988 . 65 253 SNARE and Associated Proteins AT1G32270 59.8 1.1e-50 197.6
Cmu07g0454 . 1 336 SNARE and Associated Proteins AT5G05760 65.9 3.2e-111 398.7
Cmu08g1223 . 8 382 SNARE and Associated Proteins AT3G24350 53.1 2.1e-84 309.7
Cmu02g1513 . 35 361 SNARE and Associated Proteins AT5G26980 76.8 4.7e-128 454.5
Cmu09g0526 . 1 318 SNARE and Associated Proteins AT5G26980 66.2 2.6e-102 369.0
Cmu09g0526 . 1 318 SNARE and Associated Proteins AT4G02195 66.8 1.1e-105 380.2
Cmu02g1513 . 35 363 SNARE and Associated Proteins AT4G02195 64.4 3.3e-105 378.6
Cmu02g1513 . 35 362 SNARE and Associated Proteins AT3G05710 76.3 3.9e-130 461.5
Cmu09g0526 . 1 318 SNARE and Associated Proteins AT3G05710 63.7 1.0e-98 357.1
Cmu09g1057 . 91 323 SNARE and Associated Proteins AT1G16240 72.1 2.4e-89 325.5
Cmu10g1294 . 905 1137 SNARE and Associated Proteins AT1G16240 67.8 3.3e-83 305.1
Cmu09g1057 . 90 323 SNARE and Associated Proteins AT1G79590 71.4 3.9e-88 321.6
Cmu10g1294 . 900 1137 SNARE and Associated Proteins AT1G79590 67.2 1.5e-84 309.7
Cmu06g0051 . 114 304 SNARE and Associated Proteins AT1G28490 71.7 8.3e-67 250.4
Cmu10g2760 . 1 264 SNARE and Associated Proteins AT3G09740 79.7 2.7e-113 405.2
Cmu02g2099 . 1 265 SNARE and Associated Proteins AT3G09740 67.8 1.5e-95 346.3
Cmu02g2099 . 1 265 SNARE and Associated Proteins AT3G45280 65.9 7.6e-92 334.0
Cmu10g2760 . 1 264 SNARE and Associated Proteins AT3G45280 64.4 8.7e-88 320.5
Cmu10g2760 . 1 261 SNARE and Associated Proteins AT3G61450 68.2 7.2e-95 344.0
Cmu02g2099 . 1 262 SNARE and Associated Proteins AT3G61450 61.4 3.0e-85 312.0
Cmu11g0646 . 65 290 SNARE and Associated Proteins AT1G51740 69.3 1.2e-78 290.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006644 1 6 1 1 1 0 1 1 0 1 1 1 2 1 1 1 1 2 3 1 1 1 2 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6998 PF02536 mTERF 3.40E-104 No_clan Cmu TR