Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2115 ATGGCTAGTTCAGAAGATATAATTGAAAGCTTTTGGACTGAACGAAATGTTGCAGAAAATGATGGATGTTTTTGGTGTGACATTATCCTTTATCCAGTGTGTCCAATGTTGCTGCCGTTGGTTCTGCTGGTTAACCACACTATGTGGTCATCTGGAATCCAAGCACGAGTGAAGAAACAGGTTCAAGATACAAAGCTTAGCTCCTTTGAGTTGGATTCGTTTGAGATCCCTCGGGGTCAACCTTCTAGAGGAGGAGACATTGAGCTAGGAACAAATGTTCCTACTAGTGGAGGGGATGGCTTGGAGGATTTCTTTAAAAAGGTTCAAGAGATTGAAAAACAGAACGAGAAGCTGGATAGGCTATTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACTAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGGATGGAAAAAGATGTCGATGAAGTTGGAAAAGTTGCACGTTTTGTGAAGATCAAAGTCGAAGAACTTGACAGAGAGAATCTGGCAAATAGGCAGAGGCCCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTTCCTTAAAAAAGAAGTTAAAAGACAAGATGACTGAATTCCAGATTTTACGGGAAAAAATCCATCAAGAGTACCAGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCGCTAGGGCTGACGAAGAGACCATCGAGAAATTAATTGAAACTGGGGACAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGTGCAGTTAGAGAACTGGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTCGACATGGCAGTATTGGTGGATGCGCAAGGGGATATGCTCGACAATATTGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTCCTTAAGCCATGGAATAATGGAGAGAGTCGCCCTCTGCTATCCCTCTCCTTCCCCTGTTTCTCTCAGAAGCCCAAATCCCATCGGCCGCTGCAGTTCCTCTGGCTGAAAGGATACCGCTCTCTAATAGTAGATTGGGAAGATTCTATGGAGTTAGACGCTGTTTCTGTTTCTTTTTATGTTTCTATTACTCTGTCTGATTGGCGCTGCATGTTCTCTTTGGCAGTTTTGATTCAAATGACTGCATTGTCATTTCTGAGGCCAAGAACATCTGCTAAGTTCTCCTTGGTTTTGGGCATTTCCCCGCAAATTTACGAGAAATTAGGCTTATTCTGCCCCAAGATTACCAAATCCTTCCTGAATCCATGTGCCCACCAATCGCATATTCAAAGCTTTTGGAGGGTTTTTCCATTAGGCGTACTGTATTCGACTCAATCCTCAAAACTTCCTGAATATGAAATGCCTACCGTCACCTGGGGAGCTGTTCAAGGGCGCAAAGAAAAACTTGTGTCCCGAGTCATAATCTGTGACTATTTAAAGAGTTTGGGGATTATTCCTGATGAATTAGAACACTTGGAGCTGCCTTCTACAGTTGAAGTCATGAGAGAGCGTGTCGAGTTTCTTCAGAAGTTAGGATTGACTATCGATGACATTAACGAGTTCCCATTAATGCTAGGCTGTAGTGTTCGCAAAAATATAATACCTGTTCTAGGTTACTTGGAGAAAATTGGGATTCCAAGGCCAAAACTTGGAGAATTTATTAAGAATTATCCACAGGTCTTGCATGCCAGTGTCATTGTTGAGCTTGCTCCTGTTGTTAAGCTTCTTCGTGGGCTCGATGTGGAGAAAGAAGATATTGGATATGTCCTACAGAAATACCCTGAGCTTCTGGGTTTCAAGCTTGAGGGGACAATGAGTACATCTGTTGCGTATCTTGTGAGTATAGGTGTTAATCCAAGGGATATTGGACCAATGGTCACACAATACCCGTACTTTTTGGGGATGAGAGTTGGAACCATGATCAAGCCCCTTGTTGAGTTTATTGTTTCTCTAGGTTTGCCAAAGAAGATAGTAGCAAGAATGCTCGAGAAGCGAGCATACATACTCGGTTACGATTTTGAAGAGACTGTGAAACCCAATATAGATTGCTTGCTAAGCTTTGGGATTAGGAAGGAGCTGCTTCCCTCAGTGATTGCACAGTATCCACAAATTCTTGGGTTGCCTTTGAAAGCTAAGTTGTCTTCTCAGCAATTCTTCTTTGACCTAAAGCTCAAGATTGATCCTGCAGGGTTCGCACAAGTGATAGAAAAAATGCCACAGATAGTCAGCCTTCACCAACACGTGATCATTAAACCGGCAGAGTTCTTTCTTGGACGCGGTATACCCTCCTCTGATGTAGCTAAGATGATCATTAAATGTCCCCAGCTAGTCGCTTGTCGTGTAGAACTCATGAAAAACAGTTACTACTTCTTCAAGTCTGAGATGGGCAGGCCAATTAAAGAGCTGGTCGACTTCCCCGAATATTTTACGTACAGTTTGGAATCGAGGATAAAACCGAGGTATCAAAGGCTGCAGAGTAAGGGAATCAGGTGTTCATTAAATTGGTTTCTCAACTGCAGTGATCAAAGATTTGAGGAGAGATTGAAGGGTGAATTCATTGAAACAGAGAGTTTGAGGCCATCATTTTGTATGGGAGGGAGATTAGAGCTACCAAGGAATGAGATTATTGTGTCAGATGATGAGCTTGAGGAGGATGAGTGTGATGAACAACTTCACAGACGCATTGTTTCTCTTTAG 2880 42.88 MASSEDIIESFWTERNVAENDGCFWCDIILYPVCPMLLPLVLLVNHTMWSSGIQARVKKQVQDTKLSSFELDSFEIPRGQPSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKIKVEELDRENLANRQRPGCGKGSGVDRSRTATTLSLKKKLKDKMTEFQILREKIHQEYQEVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGESRPLLSLSFPCFSQKPKSHRPLQFLWLKGYRSLIVDWEDSMELDAVSVSFYVSITLSDWRCMFSLAVLIQMTALSFLRPRTSAKFSLVLGISPQIYEKLGLFCPKITKSFLNPCAHQSHIQSFWRVFPLGVLYSTQSSKLPEYEMPTVTWGAVQGRKEKLVSRVIICDYLKSLGIIPDELEHLELPSTVEVMRERVEFLQKLGLTIDDINEFPLMLGCSVRKNIIPVLGYLEKIGIPRPKLGEFIKNYPQVLHASVIVELAPVVKLLRGLDVEKEDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPLVEFIVSLGLPKKIVARMLEKRAYILGYDFEETVKPNIDCLLSFGIRKELLPSVIAQYPQILGLPLKAKLSSQQFFFDLKLKIDPAGFAQVIEKMPQIVSLHQHVIIKPAEFFLGRGIPSSDVAKMIIKCPQLVACRVELMKNSYYFFKSEMGRPIKELVDFPEYFTYSLESRIKPRYQRLQSKGIRCSLNWFLNCSDQRFEERLKGEFIETESLRPSFCMGGRLELPRNEIIVSDDELEEDECDEQLHRRIVSL 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27095346 27114275 - CmPI595203_10g021150.1 Cmu10g2115 427645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2115 959 Pfam Syntaxin 103 306 IPR006011 GO:0016020(InterPro)
Cmu10g2115 959 Pfam mTERF 598 906 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 FunFam Transcription termination factor mterf4, chloroplastic 562 699 - -
Cmu10g2115 959 FunFam Syntaxin 132 264 364 - -
Cmu10g2115 959 FunFam Transcription termination factor MTERF4, chloroplastic 700 914 - -
Cmu10g2115 959 FunFam Syntaxin 132 96 225 - -
Cmu10g2115 959 Coils Coil 274 294 - -
Cmu10g2115 959 CDD SynN 101 258 IPR006011 GO:0016020(InterPro)
Cmu10g2115 959 SUPERFAMILY t-snare proteins 101 326 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cmu10g2115 959 SMART tSNARE_6 266 333 IPR000727 -
Cmu10g2115 959 Coils Coil 101 135 - -
Cmu10g2115 959 ProSitePatterns Syntaxin / epimorphin family signature. 277 316 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cmu10g2115 959 Gene3D - 263 364 - -
Cmu10g2115 959 SMART mt_12 720 751 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 SMART mt_12 828 859 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 SMART mt_12 860 891 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 SMART mt_12 756 788 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 SMART mt_12 793 823 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 SMART mt_12 576 607 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 SMART mt_12 648 679 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 SMART mt_12 612 643 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 SMART mt_12 684 715 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 Gene3D Transcription termination factor 3, mitochondrial 562 701 IPR038538 -
Cmu10g2115 959 Gene3D Transcription termination factor 3, mitochondrial 702 915 IPR038538 -
Cmu10g2115 959 SMART SynN_4 96 222 IPR006011 GO:0016020(InterPro)
Cmu10g2115 959 PANTHER CGI-12 PROTEIN-RELATED 561 638 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cmu10g2115 959 CDD SNARE_syntaxin1-like 270 332 - -
Cmu10g2115 959 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 271 333 IPR000727 -
Cmu10g2115 959 Pfam SNARE domain 307 359 IPR000727 -
Cmu10g2115 959 Gene3D - 101 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0534 Cmu-Chr2:5045282 Cmu10g2115 Cmu-Chr10:27095346 1.10E-14 dispersed
Cmu02g0864 Cmu-Chr2:10530186 Cmu10g2115 Cmu-Chr10:27095346 6.20E-47 dispersed
Cmu02g0866 Cmu-Chr2:10572260 Cmu10g2115 Cmu-Chr10:27095346 2.40E-84 dispersed
Cmu03g0679 Cmu-Chr3:970089 Cmu10g2115 Cmu-Chr10:27095346 1.90E-08 dispersed
Cmu03g1250 Cmu-Chr3:7431171 Cmu10g2115 Cmu-Chr10:27095346 2.60E-11 dispersed
Cmu09g2100 Cmu-Chr9:37119384 Cmu10g2115 Cmu-Chr10:27095346 4.10E-49 dispersed
Cmu10g2115 Cmu-Chr10:27095346 Cmu10g2554 Cmu-Chr10:32279926 1.50E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6998 PF02536 mTERF 3.40E-104 No_clan Cmu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2115 K15031 - csv:101203314 967.992