Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2127 ATGGATCAAAGCTCTGAGCTTTACAGATTGCTGGCACAGAACGGAGCCTTCAGCCTGGGCGGCGCCGGCGGGTCCTGCGGCTTTCCGGCGACCCAAAGCATGTCGAGCTCTTCCTCTTATTACCCTTTGGATAAGTCCACGGCGGCGGCCACCAGTGAGGCAGCGGTGCCGTCGGCTCACGACAGAGCTCTGGCGGCCCTCAAGAATCACAAGGAAGCTGAGAAGCGGAGGAGAGAGAGAATCAACTCTCATCTTGATAAGCTTCGGACTCTTCTTCCTTGTAATTCTAAGACGGACAAGGCATCTCTTCTGGCAAAAGTGGTTGAGCGAGTGAAAGAGCTGAAGAACGAGACGTCGGAGATCGCGGAGCTCGAAAGCTTCCCTTCGGAGACGGACGAGATCAGTGTGCTGTCCGGAGAGCAGTCAGTGGACGGAAGGCTTGTGTTCAAGGCGTCGTTGTGTTGCGAGGACCGTTCCGACCTCATCCCGGACCTCAACGACATCCTTAATTCCCTCCAACTTAAAACCCTTAGGGCTGACATTGTCACGGTGGGTGGCCGGATCCGCAACGTCCTCCTTATCGCTGCCAACCACCACCACAGCCTCGAGTCCGTTCATTTCCTTCAAAATGCCTTGAAATCTCTCCTTGAACGCTCCAATTCTAGCCTTACATCCAAGAGGAGGCGCCTTGTACTTCACCACAAATGA 708 54.8 MDQSSELYRLLAQNGAFSLGGAGGSCGFPATQSMSSSSSYYPLDKSTAAATSEAAVPSAHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVERVKELKNETSEIAELESFPSETDEISVLSGEQSVDGRLVFKASLCCEDRSDLIPDLNDILNSLQLKTLRADIVTVGGRIRNVLLIAANHHHSLESVHFLQNALKSLLERSNSSLTSKRRRLVLHHK 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27283995 27285633 - CmPI595203_10g021270.1 Cmu10g2127 427657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2127 235 CDD bHLH_AtAIG1_like 61 136 - -
Cmu10g2127 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 124 IPR036638 GO:0046983(InterPro)
Cmu10g2127 235 PANTHER TRANSCRIPTION FACTOR BHLH30 44 232 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2127 235 SMART finulus 71 120 IPR011598 GO:0046983(InterPro)
Cmu10g2127 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983(InterPro)
Cmu10g2127 235 Pfam Helix-loop-helix DNA-binding domain 69 115 IPR011598 GO:0046983(InterPro)
Cmu10g2127 235 Gene3D - 61 125 IPR036638 GO:0046983(InterPro)
Cmu10g2127 235 FunFam transcription factor bHLH30 60 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1371 Cmu-Chr3:8942485 Cmu10g2127 Cmu-Chr10:27283995 3.10E-34 dispersed
Cmu06g1028 Cmu-Chr6:17835645 Cmu10g2127 Cmu-Chr10:27283995 1.80E-39 dispersed
Cmu08g1108 Cmu-Chr8:23448421 Cmu10g2127 Cmu-Chr10:27283995 5.50E-25 dispersed
Cmu10g2127 Cmu-Chr10:27283995 Cmu11g0613 Cmu-Chr11:6692151 1.90E-25 dispersed
Cmu10g2127 Cmu-Chr10:27283995 Cmu05g2362 Cmu-Chr5:32838440 2.90E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7001 PF00010 HLH 3.60E-12 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2127 - - - 0.0