Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2140 ATGGCTTCTGGTAATGGGTTTTATCCCACTGATGAATTCAATTTGGATGCTAAATGGTTGATTGATCCTAAGCATCTTTTTGTTGGGCCAAAGATTGGGGAAGGTGCCCATGCCAAGGTGTATGAGGGAAAATACAAAAATCAGATTGTGGCTATCAAAATGGTGGGTAAAGGAGATACTCCTGAGAGGATGGCCAGAAGAGAAGCTCGGTTTGCTAGAGAGGTTGCAATGTTGTCCAAAGTGCAACACAAGAACTTAGTGAAGTTTATTGGCGCTTGCAAGGAACCTATGATGGTTATAGTAACTGAATTACTCACAGGTGGCACATTGCGCAAACATCTCTTGAATTTGAGGCCAAGGAGCTTGGAACTTGATGTGGCGATCGGATTTGCGCTTGATATTGCTCGTGCCATGGAGTGTTTACACTCCCATGGAATTATTCACCGTGACCTTAAACCAGAAAACTTGATATTGACTGCAGACCGTAAAACAGTTAAGCTTGCTGATTTTGGTTTGGCAAGAGAAGAATCAGTAACAGAGATGATGACTGCAGAAACAGGAACATATAGGTGGATGGCTCCAGAGCTCTATAGCACAGTCACTTTAAAACATGGTGATAAGAAGCATTATAATCATAAAGTTGATGCCTACAGCTTTGCCATTGTATTGTGGGAGCTCATCCTTAACAGGCTGCCTTTCGAAGGCATGTCGAATTTACAGGCGGCGTATGCAGCTGCTTTTAAGAACATGAGGCCCAGTGCTGAAAACCTTCCAGAGGACTTAGCTTTAATAGTGACATCATGTTGGAGAGAAGATCCAAATACAAGGCCAAACTTCAGCCAGATTATACAGATGCTATTGCAATCCCTCTCTAGAATATCACCACGAGCACCCATGATCCCACCTCGGATATGTGCTTCTGAAAACGTCGTGATGCCACCCGAATCTCCCGGCACAAATTCCTTGATGGTTGTCAGACATGGCTCGGGGGAAGCCACACACGGCATGATCGAAGAAACCCCAAAAAGCTCCTTCTTCTGCTTTAACAAGTGTTACTGA 1059 44.1 MASGNGFYPTDEFNLDAKWLIDPKHLFVGPKIGEGAHAKVYEGKYKNQIVAIKMVGKGDTPERMARREARFAREVAMLSKVQHKNLVKFIGACKEPMMVIVTELLTGGTLRKHLLNLRPRSLELDVAIGFALDIARAMECLHSHGIIHRDLKPENLILTADRKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGDKKHYNHKVDAYSFAIVLWELILNRLPFEGMSNLQAAYAAAFKNMRPSAENLPEDLALIVTSCWREDPNTRPNFSQIIQMLLQSLSRISPRAPMIPPRICASENVVMPPESPGTNSLMVVRHGSGEATHGMIEETPKSSFFCFNKCY 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27410753 27414187 - CmPI595203_10g021400.1 Cmu10g2140 427670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2140 352 SUPERFAMILY Protein kinase-like (PK-like) 18 310 IPR011009 -
Cmu10g2140 352 SMART serkin_6 26 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2140 352 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Cmu10g2140 352 CDD STKc_MAP3K-like 32 286 - -
Cmu10g2140 352 FunFam Kinase suppressor of Ras 1 15 105 - -
Cmu10g2140 352 Pfam Protein tyrosine and serine/threonine kinase 30 286 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2140 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2140 352 Gene3D Transferase(Phosphotransferase) domain 1 108 298 - -
Cmu10g2140 352 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2140 352 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2140 352 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2140 352 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2140 352 ProSitePatterns Protein kinases ATP-binding region signature. 32 57 IPR017441 GO:0005524(InterPro)
Cmu10g2140 352 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2140 352 PANTHER SERINE-THREONINE PROTEIN KINASE 20 290 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1869 Cmu-Chr1:32275019 Cmu10g2140 Cmu-Chr10:27410753 1.80E-81 dispersed
Cmu10g2140 Cmu-Chr10:27410753 Cmu10g2969 Cmu-Chr10:35915022 6.40E-115 dispersed
Cmu10g2140 Cmu-Chr10:27410753 Cmu06g1786 Cmu-Chr6:28879435 3.00E-157 wgd
Cmu10g2140 Cmu-Chr10:27410753 Cmu09g1858 Cmu-Chr9:34711557 4.70E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75855 PF07714 PK_Tyr_Ser-Thr 1.20E-56 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2140 - - - 0.0