Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2151 ATGAGAATCCACGCCCCGTCACCGTTAAGAAACGAAGATCATACTTACGACGACGTTTTGCGCGATTTTTGGGATTTTGGGAATTTTGAAGAGGTTTTTCGATTTTTGTGTAGAAATTGCTCGAAAATGGCGGGTCTTGAGGAACTTAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCTACGGACTCCCCTGTGGACCCTTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAATGCACGTCTTGGCTTGCTGATGATTCAGGGAGTAGTGAGAGAACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGTGCTAGCAGTGTTGTTCAAAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTCGAAAAGGAGAAAAGACAGCAGCTTCTTACTGAGATAAGGACACTATGCGAAGCACCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTGGAGTACATGGATGGAGGGTCATTGGCAGATGTCCTGCGTCTGAAAAGATGTATACCCGAGCCTGTCCTTTCATCTATGTTTCAGAAACTTCTTCAAGGTCTAAGTTACCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTAGTAAATCTGAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCACCAGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTCATGTTGCAGATTTTGGATGACCCGTCTCCATCACCATCAAAACATAAGTTTTCGCCGGAGTTTTGCTCTTTTGTCGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACAGCAGAGCAACTGCTTTCACACCCATTTATTAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAGTACAGAGGATGAAGGACTTGGCTGATATGTTGACAATCCATTATTACTTGCTTTTTGATGGATCTGATGAATTCTGGCACCATACAAAAGCTCTGTACCATGAAAGCTCAAGTTTAAGTTTTTCAGGGAAGCAATTTTCTGGTCCAAGTGATATCTTTGCCAAACTATCAGAAGTTCGAAGTACATTAGCAGGAGACTGGCCTCTTGAAAAACTAGTTCACGTTGTTGAAAAACTCCAATGTCGTGCTCACGGTCGGGATGGAGTTGCCATAAGGGTGTCGGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGATGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGAGAGTAAGAAAATGGGATCCTTTCGGGAGCAGTTCATCATCGAACCAAGCAACCTCATCGGTCGTTATTTCATTGCCAAACAAGAGCTTTATATAATTCAATAG 1683 42.66 MRIHAPSPLRNEDHTYDDVLRDFWDFGNFEEVFRFLCRNCSKMAGLEELKKKLTPLFDAEKGLSTDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKRCIPEPVLSSMFQKLLQGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPVQRMKDLADMLTIHYYLLFDGSDEFWHHTKALYHESSSLSFSGKQFSGPSDIFAKLSEVRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDMESKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27534084 27540448 - CmPI595203_10g021510.1 Cmu10g2151 427681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2151 560 SUPERFAMILY NTF2-like 406 558 IPR032710 -
Cmu10g2151 560 Pfam Protein kinase domain 129 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2151 560 FunFam Mitogen-activated protein kinase kinase 3 405 559 - -
Cmu10g2151 560 SMART serkin_6 125 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2151 560 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 102 414 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cmu10g2151 560 Gene3D Phosphorylase Kinase; domain 1 101 206 - -
Cmu10g2151 560 ProSitePatterns Protein kinases ATP-binding region signature. 131 154 IPR017441 GO:0005524(InterPro)
Cmu10g2151 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2151 560 SUPERFAMILY Protein kinase-like (PK-like) 127 417 IPR011009 -
Cmu10g2151 560 Gene3D - 408 558 - -
Cmu10g2151 560 CDD PKc_MAPKK_plant_like 126 385 - -
Cmu10g2151 560 Gene3D Transferase(Phosphotransferase) domain 1 207 407 - -
Cmu10g2151 560 ProSiteProfiles Nuclear transport factor 2 domain profile. 408 558 IPR018222 -
Cmu10g2151 560 ProSiteProfiles Protein kinase domain profile. 125 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2151 560 FunFam mitogen-activated protein kinase kinase 3 207 403 - -
Cmu10g2151 560 FunFam mitogen-activated protein kinase kinase 3 98 206 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2151 K20607 - - csv:101217978 1003.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g2151 Cmu-Chr10:27534084 Cmu11g0162 Cmu-Chr11:2094949 3.30E-57 dispersed
Cmu10g2151 Cmu-Chr10:27534084 Cmu11g0198 Cmu-Chr11:2444973 3.30E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1310 . . . Bda13g01619 . Bpe14g00247 . . Cmo14g00685 . . Cma14g00668 . Car14g00608 . Cpe03g00581 . . . . . . . . Cla10g01325 Cam10g1289 Cec10g1402 Cco10g1377 Clacu10g1380 Cmu10g2151 Cre10g1535 . . . . . . Chy04g01430 Cme04g01845 Blo17g00301 . . . . . . . . . . . . . . . . Bhi11g01602 . . . Hepe02g1784 . . . . . . . . . . Csa03g03971 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu03g2132 . 28 333 MAP Kinase Kinase Gene Family AT4G26070 71.6 9.9e-129 456.8
Cmu11g0162 . 27 330 MAP Kinase Kinase Gene Family AT4G26070 66.9 9.3e-119 423.7
Cmu11g0198 . 214 538 MAP Kinase Kinase Gene Family AT4G26070 55.5 5.7e-108 387.9
Cmu03g2132 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 2.3e-133 472.2
Cmu11g0162 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.4 3.0e-117 418.7
Cmu11g0198 . 198 512 MAP Kinase Kinase Gene Family AT4G29810 59.4 1.2e-110 396.7
Cmu10g2151 . 78 560 MAP Kinase Kinase Gene Family AT5G40440 79.1 2.8e-228 788.1
Cmu07g1398 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 68.6 1.3e-134 476.5
Cmu07g1398 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 63.9 1.3e-128 456.4
Cmu04g1081 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 2.0e-84 309.7
Cmu11g0198 . 189 541 MAP Kinase Kinase Gene Family AT5G56580 83.6 5.4e-170 594.0
Cmu03g2132 . 7 332 MAP Kinase Kinase Gene Family AT5G56580 61.5 7.7e-116 414.1
Cmu11g0162 . 1 330 MAP Kinase Kinase Gene Family AT5G56580 56.0 5.2e-104 374.8
Cmu04g1081 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.6 4.6e-109 391.3
Cmu04g1081 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.6 6.0e-82 301.2
Cmu04g1081 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.4 5.7e-115 411.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75857 PF00069 Pkinase 2.50E-59 CL0016 Cmu PK