Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2152 ATGTTGAAACAACAGCTTACAGAAAGGAGAAAAAATTATTGGAAGATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCGGATTGTGTTTTCGCACCATATTTCCCGCCCGAAGAGCCCCAAAAGTTCGCCAATGTCCACAAGATCTTCGGCGCCAGCAATGTTAGTAAACTGCTGAATGAAGTCCAGCCGCATCAGCGGGAGGACGCTGTGAACTCGCTCGCCTACGAGGCCGAGGCAAGGATGAAAGACCCTGTCTATGGCTGCGTTGGTGCCATCTCTATACTCCAAAGGCAAGTCATCAAGCTCCAAAAAGAGCTTGACGCTACCAACGCCGACCTCATTCGCTATGCCTGCAGCGAAATCCCCACTCCATCTCCGTCCTCGTCATCGCAATACGCTCGAAGGTCGTCGTCGACGAGCCACGAAGGAAGCTCATCTACCTCTAGCTATGGTCATTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAATGGCCCTTGTGGAGATGGCCATTGA 561 50.27 MLKQQLTERRKNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPTPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNNNGPCGDGH 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27552403 27554669 + CmPI595203_10g021520.1 Cmu10g2152 427682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2152 186 Coils Coil 104 124 - -
Cmu10g2152 186 ProSiteProfiles LOB domain profile. 24 125 IPR004883 -
Cmu10g2152 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 23 142 - -
Cmu10g2152 186 MobiDBLite consensus disorder prediction 134 160 - -
Cmu10g2152 186 Pfam Lateral organ boundaries (LOB) domain 25 122 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0544 Cmu-Chr7:6422346 Cmu10g2152 Cmu-Chr10:27552403 5.60E-33 dispersed
Cmu09g2153 Cmu-Chr9:37633605 Cmu10g2152 Cmu-Chr10:27552403 7.70E-36 dispersed
Cmu10g2152 Cmu-Chr10:27552403 Cmu11g0584 Cmu-Chr11:6419537 2.80E-32 dispersed
Cmu01g2437 Cmu-Chr1:36319110 Cmu10g2152 Cmu-Chr10:27552403 1.20E-31 transposed
Cmu02g1329 Cmu-Chr2:26716473 Cmu10g2152 Cmu-Chr10:27552403 3.00E-39 transposed
Cmu09g0064 Cmu-Chr9:868298 Cmu10g2152 Cmu-Chr10:27552403 1.10E-22 transposed
Cmu11g0609 Cmu-Chr11:6658568 Cmu10g2152 Cmu-Chr10:27552403 5.10E-38 transposed
Cmu11g1129 Cmu-Chr11:21248884 Cmu10g2152 Cmu-Chr10:27552403 5.10E-46 transposed
Cmu01g1297 Cmu-Chr1:25547676 Cmu10g2152 Cmu-Chr10:27552403 2.20E-49 wgd
Cmu10g2152 Cmu-Chr10:27552403 Cmu06g1772 Cmu-Chr6:28767374 3.60E-56 wgd
Cmu10g2152 Cmu-Chr10:27552403 Cmu09g1851 Cmu-Chr9:34644362 2.90E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7002 PF03195 LOB 2.80E-42 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2152 - - - 0.0