Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2160 ATGGCTTCCATTTTCATCCATTCCTCAAACCAATTTCCAGTCCATGGAGTTCCCTTCTTCTTCTTCTTCTTCCTTTTCTTCCCTGTTTCTCTCTCAGATCCCCGAATCTCGGAATCCGGTAGCTTCTGTGGAAAATTCAAGCCTCCACCCACATCCGGATTCATACCAACCTTCGTCGAAGAAATGGAAGCCATTTCCGAGCTTCTCACAACTCGCAGTTGGACCACTCACTTCGTCAATTCCACCCCCCCAATGTTCGCTTTATCCCAATGCTTCAAAGATCTCTCTCACACTGATTGCCTTCTCTGCTACGCCGCCAGCCGCACCGCCCTTCCCCGCTGCCTCCCTGCCGTCTCTGCCCGGATTTTCCTCGACGGATGCTTCCTCCGGTATGACAATTACAGCTTCTATAAAGAATCCACTGATTCGCTTAGGGATTCTGTGAATTGCACCTCGGAATTGGGGAAAATCGATGAATCTGAGAGGCTAGGGTTTGGGAAGAATGTTAGGCTTGTTGTTGAGACTGTGACGAGGACGGCCATGGAGAATGGCGGATTTGGGATTGGGGAAGTTAATGGGATGTTTGGTTTGGCGCAGTGTTGGGGGAGTGTTGAGCCTGAGGGATGCAGAGCTTGCTTGGAGAAGGCGAAGAGGAGTATCAGGAGCTGTTTGCCGAGTAGAGAAGGGAGAGCTATGAATGCTGGGTGTTATTTGAGATATTCGACTGTGAAATTCTATAACGATAAGGATGAAGATCGGGATCATGATGGAATTTCTGGAAGGAGAGCAGTAGTTACCATTGCCTTAGCTTCAGCTGCCTCCTTGATCATCTTCTTTTCAGCCGTGTTTGCATGCTATACAAGAATAACAAAGTTCAAGAAAGAAAAGAAAAAGCAATCACTTATTCCAACTTCCTTCAAGGATTCCAATTTGAATTACAAGTATGAAACACTTGAAAAGGCAACTAATTACTTCAACCCATCAAGTAAGATAGGCCAAGGTGGAGCTGGTTCTGTATATAAAGGAACTCTTCCAAATGGGCAGGTTGTTGCTGTGAAGAGATTGGTTTTCCATACCAGGCAATGGGTTGATGAGTTCTTCAATGAGGTGAATTTAATCCGCGGAATCCAACACAAAAACCTTGTTGCCCTTTTAGGTTGCAGCATTGAAGGGCCTGAAAGTCTGCTGGTCTATGAGTATGTTCCGAACCGGAGCCTTGATCAGTTCATTTTCGATAAGAACAAGGTTCAGATTCTAAATTGGAAACAACGTTTCAATATTATTGTGGGAACAGCTGAAGGGCTTGCACATCTTCATGAAGGTTGTAAAATAAGAATAATCCATAGAGACATAAAGAGTAGCAATGTTCTACTGGATGAAAATTTCAATCCGAAGATTGCAGATTTTGGCCTCGCTCGGCATTTTGCAGCCGATCAGTCTCATCTTAGCACAGGAATTGCCGGGACACTGGGTCCTGAATATCTCGTTCGAGGACAACTTACAGAAAAGGCTGATGTTTATAGTTTTGGAGTGTTGATACTCGAGATCGTTTGTGGTAGAAGAAACAGCTCCTTCACTGAGAATTCTACCCCACTCCTCCAAACAGTTTGGGATCTATACAAATCAGAGAGATTAACTGAAGCCATTGACACAAGCCTGAACAAGGATTACCCTGCAAAAGAAGCCATGGATGTTCTGCAAATAGGGCTTTTATGCACACAAGCTCTAGCTTCGTTGAGACCGTCAATGGCAACGATCGTGAAACTGCTAACCAGTGATGAAGAAAGGAAGGTTGCCATCCCTGAACAACCTCCATTTTTGAATCCTTGTGGACCTTCAAGAAGGTCTTGCAGAATTAGCAGCTTGGTATCTCATGCAGTTTCCAAACTTGAAGTTTCTTCTTGCACATCAACAGATTCAGGTTCTTCTTCTAACTTGCCTTCAAGAAGTGGAGATTTTGCTGAATTGAGTTCAAACTGA 1980 44.44 MASIFIHSSNQFPVHGVPFFFFFFLFFPVSLSDPRISESGSFCGKFKPPPTSGFIPTFVEEMEAISELLTTRSWTTHFVNSTPPMFALSQCFKDLSHTDCLLCYAASRTALPRCLPAVSARIFLDGCFLRYDNYSFYKESTDSLRDSVNCTSELGKIDESERLGFGKNVRLVVETVTRTAMENGGFGIGEVNGMFGLAQCWGSVEPEGCRACLEKAKRSIRSCLPSREGRAMNAGCYLRYSTVKFYNDKDEDRDHDGISGRRAVVTIALASAASLIIFFSAVFACYTRITKFKKEKKKQSLIPTSFKDSNLNYKYETLEKATNYFNPSSKIGQGGAGSVYKGTLPNGQVVAVKRLVFHTRQWVDEFFNEVNLIRGIQHKNLVALLGCSIEGPESLLVYEYVPNRSLDQFIFDKNKVQILNWKQRFNIIVGTAEGLAHLHEGCKIRIIHRDIKSSNVLLDENFNPKIADFGLARHFAADQSHLSTGIAGTLGPEYLVRGQLTEKADVYSFGVLILEIVCGRRNSSFTENSTPLLQTVWDLYKSERLTEAIDTSLNKDYPAKEAMDVLQIGLLCTQALASLRPSMATIVKLLTSDEERKVAIPEQPPFLNPCGPSRRSCRISSLVSHAVSKLEVSSCTSTDSGSSSNLPSRSGDFAELSSN 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27639042 27642121 - CmPI595203_10g021600.1 Cmu10g2160 427690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2160 659 SMART serkin_6 325 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2160 659 Pfam Salt stress response/antifungal 160 242 IPR002902 -
Cmu10g2160 659 Pfam Salt stress response/antifungal 75 134 IPR002902 -
Cmu10g2160 659 Gene3D Phosphorylase Kinase; domain 1 285 400 - -
Cmu10g2160 659 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 177 620 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cmu10g2160 659 FunFam Cysteine-rich receptor-like protein kinase 2 292 400 - -
Cmu10g2160 659 CDD STKc_IRAK 331 591 - -
Cmu10g2160 659 FunFam Cysteine-rich receptor-like protein kinase 2 401 598 - -
Cmu10g2160 659 FunFam Cysteine-rich receptor-like protein kinase 3 147 245 - -
Cmu10g2160 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2160 659 Gene3D Transferase(Phosphotransferase) domain 1 401 603 - -
Cmu10g2160 659 MobiDBLite consensus disorder prediction 634 659 - -
Cmu10g2160 659 SUPERFAMILY Protein kinase-like (PK-like) 300 590 IPR011009 -
Cmu10g2160 659 ProSiteProfiles Protein kinase domain profile. 325 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2160 659 ProSiteProfiles Gnk2-homologous domain profile. 145 245 IPR002902 -
Cmu10g2160 659 ProSiteProfiles Gnk2-homologous domain profile. 36 136 IPR002902 -
Cmu10g2160 659 Pfam Protein tyrosine and serine/threonine kinase 329 589 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2160 659 FunFam Cysteine-rich receptor-like protein kinase 42 62 136 - -
Cmu10g2160 659 Gene3D - 153 245 IPR038408 -
Cmu10g2160 659 Gene3D - 57 136 IPR038408 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1713 Cmu-Chr8:28587755 Cmu10g2160 Cmu-Chr10:27639042 3.50E-129 dispersed
Cmu10g2160 Cmu-Chr10:27639042 Cmu07g1022 Cmu-Chr7:24961755 2.90E-76 dispersed
Cmu10g2160 Cmu-Chr10:27639042 Cmu05g2600 Cmu-Chr5:34680157 1.10E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75858 PF07714 PK_Tyr_Ser-Thr 7.20E-41 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2160 - - - 0.0