Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2170 ATGTTAAGCATGTTTAGGGTCTTAACGGAAAGGAGAATACGTGTGCAACGGAAGACTATGGCAATAACAGCCCCAGGACAGCTCAATGTTAACGAGTCCCCTTCGTGGGGATCTAGAAGTGTTGATTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCGCTGAAGAAAATACGAATGGATAATGAGAGGGAAGGGTTCCCCATCACTGCCATACGAGAAATAAAAATTCTAAAGAAGCTCCATCATGAAAATGTAATAAAGTTGAAAGAGATTGTGACATCTCCAGGTCCTGAGCAGGATGAACAAGGGAAGCCAGATGGTAACAAGTATAAAGGTGGCATCTACATGGTTTTTGAGTACATGGACCATGATTTGACAGGTCTTGCTGATCGTCCAGGGATGAGGTTTTCAGTTCCCCAAATTAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTGCACAGGGATATAAAAGGCTCAAATCTGCTTATTGACAATGATGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCGTTTTCTAATGATCACAATGCAAATCTAACAAATCGTGTCATCACCTTATGGTACAGACCGCCTGAATTGCTGCTTGGGTCAACAAAATACGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCTGGCAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCGGATGAAGTCAACTGGCCTGGGGTATCAAAAATCCCTTGGTACAACAATTTCAAACCCACAAGGCCAATGAAGAGACGTCTTAGAGAAGTATTCAGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAGAAGATGCTCACTCTTGATCCTTCTCAGAGGATAGCTGCCAAGGATGCCCTAGATGCGGAGTATTTTTGGACAGATCCATTACCTTGTGACCCTAAAAGTTTACCCAAGTATGAAGCATCACACGAGTTTCAGACAAAGAAGAAGCGTCAACAGCAACGACAACATGAAGAAACTGCAAAAAGACAGAAGTTGCAACATGCACAGCATGGGCGTCTTCCACCTATTCAGCAATCGGGGCAAGCTCATGCGCAGATGCGACCATTAGCTAACCAGCCTATTCATGGGTCTCAACCACCAATTGCTGCAGGGCCTAGCCATCATTTTGGGGGGAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCTCAGGTGGAAACCCTCCTTCTGGATACAACCACCCAAGTCGTGGTGGTCAAGGTGGGGGTGGTTACGGCAACACACAGTATACTCAAGGACGAGGTGCACCCTATGGGTCTGGCAACATGTCTGGTGCTGGTCCCCGAGGTGGGGCTGGAGGTGCTGGTTATGGTGTGGGAGCTTCAAGTTACCCACAGAATGGTCCATATGCTGGTAGTTCTGGTACTGGCCGTGGCTCCAATGTGATGGGCGGAAACCGAAACCAACAATATGGATGGCAACAGTGA 1608 46.39 MLSMFRVLTERRIRVQRKTMAITAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEQDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNDGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRIAAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQHEETAKRQKLQHAQHGRLPPIQQSGQAHAQMRPLANQPIHGSQPPIAAGPSHHFGGKPRGPPGPGRYPSGGNPPSGYNHPSRGGQGGGGYGNTQYTQGRGAPYGSGNMSGAGPRGGAGGAGYGVGASSYPQNGPYAGSSGTGRGSNVMGGNRNQQYGWQQ 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27745529 27752542 - CmPI595203_10g021700.1 Cmu10g2170 427700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2170 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2170 535 MobiDBLite consensus disorder prediction 356 385 - -
Cmu10g2170 535 MobiDBLite consensus disorder prediction 462 478 - -
Cmu10g2170 535 Gene3D Transferase(Phosphotransferase) domain 1 141 383 - -
Cmu10g2170 535 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524(InterPro)
Cmu10g2170 535 SMART serkin_6 44 343 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2170 535 MobiDBLite consensus disorder prediction 506 535 - -
Cmu10g2170 535 SUPERFAMILY Protein kinase-like (PK-like) 38 351 IPR011009 -
Cmu10g2170 535 MobiDBLite consensus disorder prediction 411 535 - -
Cmu10g2170 535 Gene3D Phosphorylase Kinase; domain 1 31 140 - -
Cmu10g2170 535 PANTHER CELL DIVISION PROTEIN KINASE 44 343 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cmu10g2170 535 FunFam Cyclin-dependent kinase C-2 31 140 - -
Cmu10g2170 535 ProSiteProfiles Protein kinase domain profile. 44 343 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2170 535 CDD STKc_CDK9_like 44 343 - -
Cmu10g2170 535 MobiDBLite consensus disorder prediction 354 391 - -
Cmu10g2170 535 Pfam Protein kinase domain 44 343 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2170 535 FunFam Cyclin-dependent kinase C-2 141 383 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2396 Cmu-Chr2:37416799 Cmu10g2170 Cmu-Chr10:27745529 3.60E-272 dispersed
Cmu10g2170 Cmu-Chr10:27745529 Cmu11g0057 Cmu-Chr11:1061686 7.80E-96 dispersed
Cmu10g2165 Cmu-Chr10:27700712 Cmu10g2170 Cmu-Chr10:27745529 6.10E-32 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75860 PF00069 Pkinase 1.30E-74 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2170 K08819 - csv:101215918 969.533