Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2178 ATGGCGGTTCTGCAGCTTCCTTGTGTGAGGATTACTGACTGTTCATCCTCGCCATTGTCGACAGGAAGTAAATCGTCGTTGTTCTGGGGAAGCAATCTGTGCTTTGGAAATGGAAGTGTTAGGCATGGTCCGACAGTGAAAGCTTCATTCAATGGTCGAGTTGTTAAGGTTTTCGCCATGTCCGATAGTTCTTCTTCTTCTTCATCGTTTAAGATGAATCTCAATGAGTACATGGTTACTCTTGAGAAACCGCTCGGCATTCGGTTCGCGATTTCCGTCGATGGAAGAATCTTCGTTCACTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCAAGAATAATCATGGTGGGGGACACTTTGAAGAAGGCAAGCGATTCATCAGGCGTCAAGCTCACTGAGATTAAAGACTTTGGTGATACACAGATGATGCTGAAGGAGAAAGCAGGATCTTTTAGCCTGGTTCTTGAAAGACCCTTTTCACCTTTTCCTATTCAACAGCTTCTGCTTTCAAACGATTTAGATATTTTATTTAACAGAGGTCGGGTGCCTATTGCTACTTGGAAGAAGGAAGTTTTGGCATCAAACTTACAAACATCTGATGCAAGCAGTGGGAACTCTGGCTTTGCGACTTTCTCCTCTAAGTTCTCTACATCACAAGGTTGGAAACTTCTTAACGATCAAAATGGAAATGTAAAATCACATATGCAGAAAAACATTCTCACGCCTCAAATCAGCCAACTTGTTGGTATATTTACTGAAGAGGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCCTTGATGAATATGTCAAGGCATTAGAACGGTCTAAAGGGGAGTTATATTACGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATATACGTGGGGTCATGTATACAGACTGAAGCAGACGTAGAAGCTTTAGCAAATGACGTGGGAGTTACCGCTGTACTGAATTTTCAAGGTGCAACTGAGGCAGAAAACTGGGGGATTAATTCCAAGATAATCAACGAGTCGTGCCAAAAATTTAACATTCTAATGATCAGCTATCCTATCAGGGCAGGAGATTCTTATGATTTGAGGAAAAAACTACCATTCTGTGTGGGTCTACTTCTCCGACTGTTAAAAAAGAACCATCGAGTTTTTATAACTTGTACTTCTGGTTTTGATCGATCTCCAGCAAGTGTTATTGCATATCTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCAGCAAACCTGACAGGCCTGCAATCGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAAAATGGAAGGCATGATGGACCTCCCACTCATGCCGTTACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTTGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAGTCACAAGGGTGGGCCTAGATATGAAGCAGAAATGAAACTTCCTCAGGGGAAGTATTATTATAAGTACATCACAAATGGTCAGTGGAGGCACTCAACATCTTCACCTGCTGAAAGAGACGATAGGGGGAATGTTAACAATGTAATAGTCATCGGCGACACTGCCAGTGTTAGGCCTTCAGTTCAACCGCAAAAAAAAGATGCAAATATCGTGAAGGTAATCGAAAGGCCATTGACAGAAAATGAGCGGTTTATGTTGGCGAAAGCGGCTCGTTGCGTTGCATTTTCAGTATGTCCAATTAGATTAACTCCCAAGTAG 1776 43.02 MAVLQLPCVRITDCSSSPLSTGSKSSLFWGSNLCFGNGSVRHGPTVKASFNGRVVKVFAMSDSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVKLTEIKDFGDTQMMLKEKAGSFSLVLERPFSPFPIQQLLLSNDLDILFNRGRVPIATWKKEVLASNLQTSDASSGNSGFATFSSKFSTSQGWKLLNDQNGNVKSHMQKNILTPQISQLVGIFTEEEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEADVEALANDVGVTAVLNFQGATEAENWGINSKIINESCQKFNILMISYPIRAGDSYDLRKKLPFCVGLLLRLLKKNHRVFITCTSGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSSKPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEAEMKLPQGKYYYKYITNGQWRHSTSSPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27857099 27862387 + CmPI595203_10g021780.1 Cmu10g2178 427708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2178 591 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 57 585 - GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER)
Cmu10g2178 591 Pfam Glycogen recognition site of AMP-activated protein kinase 458 539 IPR032640 -
Cmu10g2178 591 Gene3D Immunoglobulins 445 541 IPR013783 -
Cmu10g2178 591 SUPERFAMILY E set domains 455 538 IPR014756 -
Cmu10g2178 591 ProSiteProfiles PDZ domain profile. 78 159 IPR001478 GO:0005515(InterPro)
Cmu10g2178 591 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 283 426 IPR029021 -
Cmu10g2178 591 ProSiteProfiles Dual specificity protein phosphatase domain profile. 291 450 IPR020422 GO:0006470(InterPro)
Cmu10g2178 591 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 445 541 - -
Cmu10g2178 591 CDD DSP_laforin-like 290 436 IPR045204 GO:0019203(InterPro)
Cmu10g2178 591 SUPERFAMILY PDZ domain-like 61 163 IPR036034 GO:0005515(InterPro)
Cmu10g2178 591 CDD E_set_AMPKbeta_like_N 458 537 - -
Cmu10g2178 591 Gene3D Protein tyrosine phosphatase superfamily 284 550 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2178 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu01g1654 . 118 691 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.4e-191 665.2
Cmu02g0661 . 594 1164 Protein tyrosine phosphatase (PTP) family AT3G50110 58.0 3.0e-179 625.5
Cmu10g2292 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Cmu08g0746 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Cmu08g0746 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Cmu06g1291 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cmu09g0990 . 86 390 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 3.1e-122 435.3
Cmu06g1874 . 16 911 Protein tyrosine phosphatase (PTP) family AT5G23720 65.2 0.0e+00 1089.3
Cmu06g0571 . 75 214 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 2.0e-42 169.1
Cmu09g1989 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cmu05g2202 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 70.1 6.2e-116 414.1
Cmu07g0539 . 10 271 Protein tyrosine phosphatase (PTP) family AT3G10940 65.3 7.5e-98 354.0
Cmu10g2178 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 73.1 7.2e-204 706.8
Cmu02g1800 . 93 294 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 1.8e-74 276.2
Cmu09g1064 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cmu10g1085 . 69 401 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 3.0e-101 365.5
Cmu11g0192 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.7e-80 296.6
Cmu11g0192 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.3e-45 179.9
Cmu10g1085 . 105 280 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.0e-43 171.0
Cmu02g1800 . 127 295 Protein tyrosine phosphatase (PTP) family AT4G03960 78.1 2.3e-77 285.4
Cmu09g1064 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.1e-70 260.8
Cmu03g1637 . 13 181 Protein tyrosine phosphatase (PTP) family AT4G03960 58.6 5.0e-56 214.5
Cmu03g1637 . 7 188 Protein tyrosine phosphatase (PTP) family AT3G02800 69.2 3.7e-70 261.5
Cmu02g1800 . 118 290 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Cmu07g0350 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.5e-63 239.2
Cmu10g2292 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Cmu02g0661 . 560 1164 Protein tyrosine phosphatase (PTP) family AT3G19420 64.3 2.6e-220 761.9
Cmu01g1654 . 116 691 Protein tyrosine phosphatase (PTP) family AT3G19420 60.8 6.6e-200 694.1
Cmu01g1654 . 118 691 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.4e-191 665.2
Cmu02g0661 . 594 1164 Protein tyrosine phosphatase (PTP) family AT3G50110 58.0 3.0e-179 625.5
Cmu06g1291 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cmu08g0746 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Cmu08g0746 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Cmu02g2183 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 3.1e-69 258.8
Cmu10g1027 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.3 1.1e-110 396.7
Cmu04g0770 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.3e-286 982.2
Cmu04g0770 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.0e-258 888.6
Cmu04g0770 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.0e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008517 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35