Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2192 ATGGAATCTGGTCGGTTCTTGTTTAATCCGCCGCCTTGCGGTGGCAACATGCTTTATCTTGGCGGAGCCGGTGCCGATCCTTGTCTGCGAGGAGGAAGAACAATGATGAGTATGTCCATGAATGAGAGTTCAAAAGGGAGGCCATTTTTCAGATCACCTAACGATCTTTACGACGATGAATATTACGACGAGTTCTACCCTGAGAAGAAGCGTCGTCTCACCCATGACCAGGTTCAAATGCTGGAGAAGAATTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTGGCCAAGAAGCTAGGGCTGCAACCGAGGCAGGTCGCTGTGTGGTTCCAAAATCGTCGTGCTCGATGGAAGACGAAGCAGCTCGAAAGGGACTATGATGTTCTTAAAGCTTCATATGATTCGCTTCTGTCTAACTATGACTCAATACTCAAGGAGAATGCAGTTCTTAAATCTGAGGTGGCTTCCTTAACTGAGAAATGTCAAGCTCAAGGGCTGAATGGAGGAGAAGCACCAATTCCATCAGAGCTTCTTCTAGCAGAAATTGCCCATGTCTCTGCCCCGCACTCCGGCAGAAAGGCTGAGGATCGTCTGAGTTCAGGGAGTGATAGCAGTGCAGTGATCGATGATAATTGTCCACAACTCATCGACAGCGGTGATTCTTACTTCCCTAGCAGCGAGTATCCACAATTGCCAAACGGGTTGCAAATTGAACACGATGATACGAATGACAATAGCAATTACTTGTTCTCAGATATGTTTGCAGCAGCAAACCAACAGAATCAAGAGGGAGGGCCTCCATCTTGGTGGACATGGACTTAG 834 47.6 MESGRFLFNPPPCGGNMLYLGGAGADPCLRGGRTMMSMSMNESSKGRPFFRSPNDLYDDEYYDEFYPEKKRRLTHDQVQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSNYDSILKENAVLKSEVASLTEKCQAQGLNGGEAPIPSELLLAEIAHVSAPHSGRKAEDRLSSGSDSSAVIDDNCPQLIDSGDSYFPSSEYPQLPNGLQIEHDDTNDNSNYLFSDMFAAANQQNQEGGPPSWWTWT 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27992538 27996872 + CmPI595203_10g021920.1 Cmu10g2192 427722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2192 277 FunFam Homeobox-leucine zipper protein HAT5 62 126 - -
Cmu10g2192 277 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677(InterPro)
Cmu10g2192 277 Pfam Homeobox associated leucine zipper 124 165 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g2192 277 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677(InterPro)
Cmu10g2192 277 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677(InterPro)
Cmu10g2192 277 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu10g2192 277 SUPERFAMILY Homeodomain-like 63 126 IPR009057 -
Cmu10g2192 277 SMART HOX_1 67 128 IPR001356 GO:0003677(InterPro)
Cmu10g2192 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 44 242 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cmu10g2192 277 CDD homeodomain 69 125 IPR001356 GO:0003677(InterPro)
Cmu10g2192 277 Gene3D - 67 130 - -
Cmu10g2192 277 Coils Coil 144 164 - -
Cmu10g2192 277 Pfam Homeodomain 69 122 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1405 Cmu-Chr1:27572278 Cmu10g2192 Cmu-Chr10:27992538 8.10E-30 dispersed
Cmu05g2517 Cmu-Chr5:34015776 Cmu10g2192 Cmu-Chr10:27992538 2.70E-22 dispersed
Cmu10g2192 Cmu-Chr10:27992538 Cmu11g1433 Cmu-Chr11:26553002 3.10E-24 dispersed
Cmu10g2192 Cmu-Chr10:27992538 Cmu09g1814 Cmu-Chr9:34300676 2.10E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7004 PF00046 Homeodomain 4.30E-18 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2192 K09338 - csv:101212142 475.707