Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu10g2192 | ATGGAATCTGGTCGGTTCTTGTTTAATCCGCCGCCTTGCGGTGGCAACATGCTTTATCTTGGCGGAGCCGGTGCCGATCCTTGTCTGCGAGGAGGAAGAACAATGATGAGTATGTCCATGAATGAGAGTTCAAAAGGGAGGCCATTTTTCAGATCACCTAACGATCTTTACGACGATGAATATTACGACGAGTTCTACCCTGAGAAGAAGCGTCGTCTCACCCATGACCAGGTTCAAATGCTGGAGAAGAATTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTGGCCAAGAAGCTAGGGCTGCAACCGAGGCAGGTCGCTGTGTGGTTCCAAAATCGTCGTGCTCGATGGAAGACGAAGCAGCTCGAAAGGGACTATGATGTTCTTAAAGCTTCATATGATTCGCTTCTGTCTAACTATGACTCAATACTCAAGGAGAATGCAGTTCTTAAATCTGAGGTGGCTTCCTTAACTGAGAAATGTCAAGCTCAAGGGCTGAATGGAGGAGAAGCACCAATTCCATCAGAGCTTCTTCTAGCAGAAATTGCCCATGTCTCTGCCCCGCACTCCGGCAGAAAGGCTGAGGATCGTCTGAGTTCAGGGAGTGATAGCAGTGCAGTGATCGATGATAATTGTCCACAACTCATCGACAGCGGTGATTCTTACTTCCCTAGCAGCGAGTATCCACAATTGCCAAACGGGTTGCAAATTGAACACGATGATACGAATGACAATAGCAATTACTTGTTCTCAGATATGTTTGCAGCAGCAAACCAACAGAATCAAGAGGGAGGGCCTCCATCTTGGTGGACATGGACTTAG | 834 | 47.6 | MESGRFLFNPPPCGGNMLYLGGAGADPCLRGGRTMMSMSMNESSKGRPFFRSPNDLYDDEYYDEFYPEKKRRLTHDQVQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSNYDSILKENAVLKSEVASLTEKCQAQGLNGGEAPIPSELLLAEIAHVSAPHSGRKAEDRLSSGSDSSAVIDDNCPQLIDSGDSYFPSSEYPQLPNGLQIEHDDTNDNSNYLFSDMFAAANQQNQEGGPPSWWTWT | 277 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 27992538 | 27996872 | + | CmPI595203_10g021920.1 | Cmu10g2192 | 427722 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu10g2192 | 277 | FunFam | Homeobox-leucine zipper protein HAT5 | 62 | 126 | - | - | |
Cmu10g2192 | 277 | ProSiteProfiles | 'Homeobox' domain profile. | 64 | 124 | IPR001356 | GO:0003677(InterPro) | |
Cmu10g2192 | 277 | Pfam | Homeobox associated leucine zipper | 124 | 165 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu10g2192 | 277 | PRINTS | Lambda-repressor HTH signature | 104 | 120 | IPR000047 | GO:0003677(InterPro) | |
Cmu10g2192 | 277 | PRINTS | Lambda-repressor HTH signature | 95 | 104 | IPR000047 | GO:0003677(InterPro) | |
Cmu10g2192 | 277 | ProSitePatterns | 'Homeobox' domain signature. | 99 | 122 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cmu10g2192 | 277 | SUPERFAMILY | Homeodomain-like | 63 | 126 | IPR009057 | - | |
Cmu10g2192 | 277 | SMART | HOX_1 | 67 | 128 | IPR001356 | GO:0003677(InterPro) | |
Cmu10g2192 | 277 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 44 | 242 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Cmu10g2192 | 277 | CDD | homeodomain | 69 | 125 | IPR001356 | GO:0003677(InterPro) | |
Cmu10g2192 | 277 | Gene3D | - | 67 | 130 | - | - | |
Cmu10g2192 | 277 | Coils | Coil | 144 | 164 | - | - | |
Cmu10g2192 | 277 | Pfam | Homeodomain | 69 | 122 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g1405 | Cmu-Chr1:27572278 | Cmu10g2192 | Cmu-Chr10:27992538 | 8.10E-30 | dispersed | |
Cmu05g2517 | Cmu-Chr5:34015776 | Cmu10g2192 | Cmu-Chr10:27992538 | 2.70E-22 | dispersed | |
Cmu10g2192 | Cmu-Chr10:27992538 | Cmu11g1433 | Cmu-Chr11:26553002 | 3.10E-24 | dispersed | |
Cmu10g2192 | Cmu-Chr10:27992538 | Cmu09g1814 | Cmu-Chr9:34300676 | 2.10E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
7004 | PF00046 | Homeodomain | 4.30E-18 | CL0123 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu10g2192 | K09338 | - | csv:101212142 | 475.707 |