Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2195 ATGGATAGAATCATCCAGTCGCCGGCGTCCAAGTTCCGCCCCTTTCGGCGACAGCTAATCGGCTCGTCCTCCGATTCGGCCACCGGAGCGGCGGCGGCCACGGACGAACACCCAAATTACATCCTCCTCCGCTACCAAATCCTCGATCCTGATAGCGACATCGTAGCGCAATGGAACCGGGTGTTTCTAGTGACATGCCTGATCGCTCTGTTCATCGATCCGCTGTATTTCTACACGTCGTCTGTGGGAGGACCGGCGTGCCTGACCTCAGAGGTGAATCTGGGAGTGGTGATCACATTCTTCAGAACGGTGACGGATCTGTTCTTCTTGCTGCACATGGTGCTGAAGTTTCGAACCGCGTATGTGGCTCCAAGCTCTAGGGTTTTTGGAAGGGGAGAGCTGGTTATGGATGCCAAAGCCATTGCTACGCGCTATTTGAAATCTGATTTTGTGATTGATCTTGCCGCTACTCTCCCCCTCCCACAAATAGTGATGTGGTTGGTGATTCCAGCAACAAGAAACTCAAGGGTAGATCATGCCAACAACACAATTGCTCTCCTTGTTTTGCTACAATACGTTCCAAGGCTGTTCCTCATCTTCCCTCTCAACCAACGCATCATCAAAACCACTGGTGTTGTTGCCAAAACTGCTTGGGCCGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCTAGTCATGTTTTGGGATCTACATGGTATTTGCTGTCCATAGGGAGACAGTTCTCATGTTGGAAATCAGAGTGTGCAAAGGAAAATGCCTCCAAAGTTCTAACATGCCTACCCTTCTTCTTGGATTGTAACAGTTTGAAAGACACTGAAAGACAATATTGGCTCAATGTCACTCAGGTTACTTCCAAATGTGATCCTAGGAATGAGAACATAAAGTTCAAGTTTGGAATGTTCTCAGATGCTTTCACCAATGATGTTGCCTCCTCCCATTTCTTTGCAAAGTACTTTTATTGTCTTTGGTGGGGCCTCAGAAATTTAAGTTCATACGGTCAAACTTTGGATACAACAACTTATATTGGCGAGACATTATTTTGCATATCAACTTGCATATTTGGGTTGATATTATTTTCACAACTCATTGGCAACATGCAGACATATTTGCAATCAATGACAGTAAGACTTGAAGAATGGAGGATAAAGAGAAGGGACACTGAAGAATGGATGAGACGTCGTCAATTACCACCAGATTTGCAGGAACGAGTTCGCCGATTCGTCCAATATAAATGGCTGGCCACGAGAGGAGTTAATGAAGAATCTATATTGCGTTCGTTGCCTATAGACCTTCGTCGTGAGATTCAACAACATTTGTGTTTGTCACTCGTTCGTCGTGTTCCTTTCTTCTCACAAATGGATGATCAACTTCTTGATGCCATATGTGAGCGTTTAGTCTCATCCTTGTGTACTCAAGGAACATATATTGTGCGAGAGGATGACCCAGTTAACGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGCTCAACGACGAATGGCGGTCGATCTGGCTTTTTCAACTCCATTACACTAAAACCAGGAGATTTTTGTGGTGAAGAACTATTGACATGGGCTTTGATGCCAAGCTCTAGTTTGAATATGCCTTCTTCTACTCGAAGCGTCCGTGCACTTACCGAAGTTGAAGCTTTTGCTCTTCGAGCTGAGGATCTCAAGTTCGTTGCTGGACAATTTAAACGCCTGCATAGCAAGAAACTACAACATGCCTTTAGGTATTATTCCCATCAATGGAGGACATGGGGTGCTTGTTTAATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAATTGGCAAAGAGATCAGCAGCATTCAGAGACAGTTTAAGTTACTATGCAGATTCAGTGCAACAAGATATCGAATACGATATCGAGCTAGCAGATGAAAATTATGACGACGACAGCAACGACGACGAGGACGACGACGACATGTCTTCTGCAGACTACATGAACAAAACTCAACATCTAGGGGCCACAATTTTGGCTTCAAAGTTTGCTGCCAACACTAGAAGAGGAGTTAATCAAAAGGCTCAAACATCCAAACCTTCAAGTTTGAAAATGCCGAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA 2148 44.46 MDRIIQSPASKFRPFRRQLIGSSSDSATGAAAATDEHPNYILLRYQILDPDSDIVAQWNRVFLVTCLIALFIDPLYFYTSSVGGPACLTSEVNLGVVITFFRTVTDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDAKAIATRYLKSDFVIDLAATLPLPQIVMWLVIPATRNSRVDHANNTIALLVLLQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWKSECAKENASKVLTCLPFFLDCNSLKDTERQYWLNVTQVTSKCDPRNENIKFKFGMFSDAFTNDVASSHFFAKYFYCLWWGLRNLSSYGQTLDTTTYIGETLFCISTCIFGLILFSQLIGNMQTYLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWLATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRSVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKRSAAFRDSLSYYADSVQQDIEYDIELADENYDDDSNDDEDDDDMSSADYMNKTQHLGATILASKFAANTRRGVNQKAQTSKPSSLKMPKLFKPDEPDFSMDG 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28034987 28038656 - CmPI595203_10g021950.1 Cmu10g2195 427725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2195 715 Pfam Ion transport protein 58 383 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2195 715 ProSiteProfiles cAMP/cGMP binding motif profile. 456 586 IPR000595 -
Cmu10g2195 715 Gene3D Helix hairpin bin 383 447 - -
Cmu10g2195 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 42 693 - -
Cmu10g2195 715 CDD CAP_ED 456 587 IPR000595 -
Cmu10g2195 715 SMART cnmp_10 456 587 IPR000595 -
Cmu10g2195 715 SUPERFAMILY cAMP-binding domain-like 386 581 IPR018490 -
Cmu10g2195 715 Gene3D - 61 381 - -
Cmu10g2195 715 MobiDBLite consensus disorder prediction 701 715 - -
Cmu10g2195 715 MobiDBLite consensus disorder prediction 683 698 - -
Cmu10g2195 715 MobiDBLite consensus disorder prediction 683 715 - -
Cmu10g2195 715 FunFam Cyclic nucleotide-gated ion channel 1 454 572 - -
Cmu10g2195 715 Gene3D Jelly Rolls 454 574 IPR014710 -
Cmu10g2195 715 SUPERFAMILY Voltage-gated potassium channels 49 378 - -
Cmu10g2195 715 FunFam Cyclic nucleotide-gated ion channel 1 383 447 - -
Cmu10g2195 715 Pfam Cyclic nucleotide-binding domain 479 566 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g2195 Cmu-Chr10:28034987 Cmu10g2225 Cmu-Chr10:28377738 3.50E-184 dispersed
Cmu02g2116 Cmu-Chr2:34818522 Cmu10g2195 Cmu-Chr10:28034987 1.00E-202 transposed
Cmu04g0937 Cmu-Chr4:23814588 Cmu10g2195 Cmu-Chr10:28034987 1.10E-173 transposed
Cmu05g2693 Cmu-Chr5:35431280 Cmu10g2195 Cmu-Chr10:28034987 3.00E-244 transposed
Cmu06g1352 Cmu-Chr6:24717597 Cmu10g2195 Cmu-Chr10:28034987 3.20E-241 transposed
Cmu07g1669 Cmu-Chr7:32030418 Cmu10g2195 Cmu-Chr10:28034987 3.10E-90 transposed
Cmu11g0467 Cmu-Chr11:5173677 Cmu10g2195 Cmu-Chr10:28034987 2.20E-101 transposed
Cmu10g2195 Cmu-Chr10:28034987 Cmu06g1739 Cmu-Chr6:28364609 9.00E-265 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2195 K05391 - csv:101216651 1339.32