Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2203 ATGGAGAGAAGCTTGTTTTACAAAGATGTTGTGCCATTCGCGGCCATGGTTGCGGCGGAGTGCGCCACCGTTGGCTCCAACACCGGCTTCAAAGCCGCCACAGCTAGAGGCATCAGCTACTACGTCTTCACCCTCTACGTTTGTATGGTCGCCGCCGCCGCCCTCGTCCCGTTTGCAGTTATCTTTCATAAGTCGCCGGAGCTTCCTCCCAACAGAATTTCCTTTTTCTTCAAAATCGTCTGCCTCTCCGCGCTCGGACTATTCTGCCAATTGCTTGGAAACAAAGGACTTGAGTACAGCTCACCAACTCTTTCATCCGCCATTAGCAACCTAATTCCAGCTTTCACTTTCATTATGGCTGTCTTTTTTAGGATGGAAAAGATAGATTTGAAAAGAAGCAGCAGCATAGTGAAAATTGTGGGGTCAACAGTGTCCATAGCAGGTGCTTTGGTAGTGGTTTTGTACAAAGGCCCAATTGTGATATCAAACCCATATTCTCATGGCCCAAAAGAGTTGGGCCTCCTTTATCAAAATTCCCCTTTGGGCTCTTCACATCCACAGCCCAATTGGATAATGGGTGGCCTTTGCTTTGTTTTTCAATACCTTTGCAACTCCTTTTGGTACATTCTTCAGACCCAAATCATAAAAGTTTACCCAGATGAGGTAAGTGTGGTGGCAGTATACTACGTTATCCAGGCAGTTTTAACTGCCCCAATTTGTTTGATAGCAGAAACAGATATGAGCGCTTGGAAGCTAACAAATCCACTCAGTTTTCTTTTGATTTTCAACTCGGGTTTGATGGGGCAGTCTTTTGTGGCTGCCATTCACACATGGGGACTTAACTTGAAGGGACCTGTTTATGTGTCTAGTTTTAGGCCATTGTCCATTGCCATTGCAGCTGCTATGGGTGCCCTTCTCCTTGGTGATGATCTTCATCTTGGAAGTATAATTGGAGCAATCATAATATCAATTGGATTCTATGGCATATTGTGGGGAAAAGCAAAAGAAGAAGAATTGAAGGAATTAGATGGTGTTTGTGGGTTGGAATCTTCATCCAAAGCTCCATTGCTGCAATATTATAGAGTTGAAGATGCATAA 1098 44.44 MERSLFYKDVVPFAAMVAAECATVGSNTGFKAATARGISYYVFTLYVCMVAAAALVPFAVIFHKSPELPPNRISFFFKIVCLSALGLFCQLLGNKGLEYSSPTLSSAISNLIPAFTFIMAVFFRMEKIDLKRSSSIVKIVGSTVSIAGALVVVLYKGPIVISNPYSHGPKELGLLYQNSPLGSSHPQPNWIMGGLCFVFQYLCNSFWYILQTQIIKVYPDEVSVVAVYYVIQAVLTAPICLIAETDMSAWKLTNPLSFLLIFNSGLMGQSFVAAIHTWGLNLKGPVYVSSFRPLSIAIAAAMGALLLGDDLHLGSIIGAIIISIGFYGILWGKAKEEELKELDGVCGLESSSKAPLLQYYRVEDA 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28114747 28121878 + CmPI595203_10g022030.1 Cmu10g2203 427733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2203 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Cmu10g2203 365 Pfam EamA-like transporter family 23 146 IPR000620 GO:0016020(InterPro)
Cmu10g2203 365 PANTHER WAT1-RELATED PROTEIN 14 341 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cmu10g2203 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 335 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2203 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1806 Cmu-Chr9:34220602 Cmu10g2203 Cmu-Chr10:28114747 1.50E-77 dispersed
Cmu09g1807 Cmu-Chr9:34235840 Cmu10g2203 Cmu-Chr10:28114747 3.60E-49 dispersed
Cmu10g2203 Cmu-Chr10:28114747 Cmu11g1324 Cmu-Chr11:25447424 3.10E-43 dispersed
Cmu10g2202 Cmu-Chr10:28098525 Cmu10g2203 Cmu-Chr10:28114747 1.20E-121 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1392 Blo10g00468 . . . . . . . . Cmo11g01705 . . . . Sed02g0070 . Cpe13g00914 Bhi06g00489 Tan11g0599 Cmetu09g0872 . Hepe02g3119 . Lcy10g0275 Cla10g01377 Cam10g1233 Cec10g1461 Cco10g1432 Clacu10g1435 Cmu10g2203 Cre10g1586 . . Cone2ag0146 Cone16ag0908 Lsi02g01545 Csa05g02916 Chy04g01479 Cme04g01914 . . . . . . . . . Cmo04g02852 Cmo15g00335 Cma04g02720 Cma15g00320 Car04g02626 Car15g00306 . Cpe01g02361 Bhi11g03089 . . . . . . Cla09g01838 . Cec09g1995 Cco09g2088 . . Cre01g0574 . Csa03g03910 Chy09g00321 Cme09g00340
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu07g1091 . 1 755 Nodulin-like Gene Family AT4G19180 61.2 2.9e-250 861.7
Cmu11g1598 . 19 279 Nodulin-like Gene Family AT3G45870 70.5 2.3e-99 359.0
Cmu09g1806 . 33 392 Nodulin-like Gene Family AT3G28050 58.8 1.3e-113 406.8
Cmu10g1098 . 2 335 Nodulin-like Gene Family AT5G47470 60.6 1.9e-104 376.3
Cmu01g0401 . 7 338 Nodulin-like Gene Family AT5G47470 58.6 1.2e-101 367.1
Cmu09g1806 . 31 354 Nodulin-like Gene Family AT5G40230 54.0 8.1e-92 334.3
Cmu09g1806 . 24 354 Nodulin-like Gene Family AT5G40240 52.3 2.6e-90 329.3
Cmu10g2203 . 6 364 Nodulin-like Gene Family AT5G40240 50.4 2.6e-90 329.3
Cmu10g2202 . 12 335 Nodulin-like Gene Family AT5G40240 50.8 6.2e-84 308.1
Cmu05g1911 . 16 274 Nodulin-like Gene Family AT3G53210 60.6 5.2e-85 311.2
Cmu08g1406 . 89 355 Nodulin-like Gene Family AT3G53210 57.3 2.0e-84 309.3
Cmu04g0881 . 99 360 Nodulin-like Gene Family AT2G37450 59.8 1.9e-82 302.8
Cmu07g0361 . 98 332 Nodulin-like Gene Family AT2G37450 56.6 5.8e-68 254.6
Cmu07g0362 . 98 334 Nodulin-like Gene Family AT2G37450 55.7 1.3e-67 253.4
Cmu08g0509 . 97 337 Nodulin-like Gene Family AT2G37450 50.4 1.2e-65 246.9
Cmu11g1565 . 104 336 Nodulin-like Gene Family AT2G37450 54.5 3.0e-64 242.3
Cmu09g1924 . 100 333 Nodulin-like Gene Family AT2G37450 51.5 9.0e-61 230.7
Cmu04g0881 . 12 338 Nodulin-like Gene Family AT2G37460 67.6 9.1e-123 437.2
Cmu07g0362 . 11 334 Nodulin-like Gene Family AT2G37460 57.4 5.7e-101 364.8
Cmu07g0361 . 11 332 Nodulin-like Gene Family AT2G37460 57.1 1.0e-97 354.0
Cmu11g1565 . 16 343 Nodulin-like Gene Family AT2G37460 54.8 3.8e-97 352.1
Cmu08g0509 . 3 330 Nodulin-like Gene Family AT2G37460 50.5 1.4e-94 343.6
Cmu04g0632 . 13 362 Nodulin-like Gene Family AT2G37460 51.0 3.4e-93 339.0
Cmu09g1924 . 10 333 Nodulin-like Gene Family AT2G37460 55.7 7.5e-93 337.8
Cmu09g1926 . 8 331 Nodulin-like Gene Family AT2G37460 53.1 9.8e-93 337.4
Cmu10g2382 . 12 342 Nodulin-like Gene Family AT2G37460 52.7 3.3e-88 322.4
Cmu08g1406 . 77 468 Nodulin-like Gene Family AT1G75500 72.5 3.9e-161 564.7
Cmu05g1911 . 1 388 Nodulin-like Gene Family AT1G75500 73.0 6.0e-154 540.8
Cmu06g1512 . 21 347 Nodulin-like Gene Family AT1G75500 62.2 1.9e-115 412.9
Cmu05g2565 . 1 366 Nodulin-like Gene Family AT1G60050 50.8 1.0e-94 344.0
Cmu07g0362 . 8 361 Nodulin-like Gene Family AT2G39510 59.6 6.6e-118 421.0
Cmu07g0361 . 12 341 Nodulin-like Gene Family AT2G39510 61.6 6.4e-113 404.4
Cmu04g0881 . 13 345 Nodulin-like Gene Family AT2G39510 60.5 1.6e-111 399.8
Cmu09g1926 . 8 343 Nodulin-like Gene Family AT2G39510 56.2 1.6e-108 389.8
Cmu09g1924 . 13 334 Nodulin-like Gene Family AT2G39510 59.2 8.4e-105 377.5
Cmu11g1565 . 18 335 Nodulin-like Gene Family AT2G39510 57.0 9.9e-98 354.0
Cmu04g0632 . 16 339 Nodulin-like Gene Family AT2G39510 52.0 5.6e-93 338.2
Cmu10g2382 . 16 340 Nodulin-like Gene Family AT2G39510 52.1 6.9e-91 331.3
Cmu08g0509 . 2 257 Nodulin-like Gene Family AT4G08290 63.5 1.6e-87 319.7
Cmu11g1565 . 14 263 Nodulin-like Gene Family AT4G08290 52.9 4.9e-73 271.6
Cmu11g1565 . 12 355 Nodulin-like Gene Family AT4G08300 66.3 8.1e-124 440.7
Cmu08g0509 . 7 356 Nodulin-like Gene Family AT4G08300 50.7 8.7e-94 340.9
Cmu04g0881 . 13 332 Nodulin-like Gene Family AT4G08300 50.2 5.6e-85 311.6
Cmu02g0076 . 9 260 Nodulin-like Gene Family AT5G64700 60.7 1.4e-77 286.6
Cmu01g1520 . 1 236 Nodulin-like Gene Family AT5G64700 53.3 2.0e-60 229.6
Cmu11g1277 . 1 368 Nodulin-like Gene Family AT4G30420 53.8 3.3e-104 375.6
Cmu11g1324 . 6 406 Nodulin-like Gene Family AT5G07050 63.4 3.0e-140 495.4
Cmu10g2382 . 10 342 Nodulin-like Gene Family AT5G07050 68.0 1.7e-127 453.0
Cmu04g0632 . 10 339 Nodulin-like Gene Family AT5G07050 64.3 2.1e-122 436.0
Cmu11g1565 . 18 336 Nodulin-like Gene Family AT5G07050 52.1 7.2e-94 341.3
Cmu09g1926 . 8 331 Nodulin-like Gene Family AT5G07050 50.8 7.2e-86 314.7
Cmu04g0632 . 13 357 Nodulin-like Gene Family AT3G56620 58.8 9.0e-107 384.0
Cmu11g1324 . 14 338 Nodulin-like Gene Family AT3G56620 56.4 5.3e-99 358.2
Cmu05g2565 . 1 372 Nodulin-like Gene Family AT1G70260 55.4 7.6e-106 380.9
Cmu01g1043 . 73 401 Nodulin-like Gene Family AT1G09380 61.5 7.8e-111 397.5
Cmu02g1471 . 1 332 Nodulin-like Gene Family AT1G09380 58.4 1.0e-110 397.1
Cmu10g1098 . 92 325 Nodulin-like Gene Family AT4G16620 50.2 2.3e-56 216.1
Cmu04g0632 . 13 352 Nodulin-like Gene Family AT2G40900 60.6 3.5e-109 392.1
Cmu10g2382 . 12 363 Nodulin-like Gene Family AT2G40900 53.4 1.0e-105 380.6
Cmu11g1324 . 14 333 Nodulin-like Gene Family AT2G40900 56.9 3.8e-100 362.1
Cmu06g1512 . 15 365 Nodulin-like Gene Family AT3G18200 68.5 3.2e-128 455.3
Cmu08g1406 . 89 433 Nodulin-like Gene Family AT3G18200 57.7 8.3e-108 387.5
Cmu05g1911 . 16 354 Nodulin-like Gene Family AT3G18200 54.6 3.7e-100 362.1
Cmu11g1565 . 12 355 Nodulin-like Gene Family AT1G44800 64.3 7.5e-122 434.1
Cmu08g0509 . 7 349 Nodulin-like Gene Family AT1G44800 51.6 7.0e-96 347.8
Cmu04g0632 . 12 339 Nodulin-like Gene Family AT1G44800 50.3 1.2e-87 320.5
Cmu11g1598 . 103 373 Nodulin-like Gene Family AT5G45370 68.7 2.2e-102 369.0
Cmu11g1565 . 12 313 Nodulin-like Gene Family AT1G21890 65.4 2.4e-114 409.1
Cmu08g0509 . 6 307 Nodulin-like Gene Family AT1G21890 50.8 8.7e-88 320.9
Cmu10g2382 . 15 318 Nodulin-like Gene Family AT1G21890 52.9 1.8e-85 313.2
Cmu04g0881 . 11 311 Nodulin-like Gene Family AT1G21890 50.3 7.9e-81 297.7
Cmu07g1214 . 1 565 Nodulin-like Gene Family AT1G80530 59.4 2.0e-187 652.5
Cmu07g1108 . 4 417 Nodulin-like Gene Family AT4G19450 65.7 1.9e-145 512.7
Cmu06g0062 . 44 442 Nodulin-like Gene Family AT4G19450 57.7 3.5e-128 455.3
Cmu06g1699 . 7 538 Nodulin-like Gene Family AT1G74780 58.2 9.6e-179 623.6
Cmu06g1701 . 13 481 Nodulin-like Gene Family AT1G74780 58.1 2.1e-154 542.7
Cmu06g1700 . 6 459 Nodulin-like Gene Family AT1G74780 56.7 2.2e-143 506.1
Cmu02g1181 . 9 540 Nodulin-like Gene Family AT4G34950 70.2 6.3e-221 763.8
Cmu02g0440 . 10 514 Nodulin-like Gene Family AT4G34950 66.4 1.6e-203 706.1
Cmu11g0775 . 6 592 Nodulin-like Gene Family AT5G14120 68.9 8.7e-234 806.6
Cmu02g1181 . 1 386 Nodulin-like Gene Family AT2G16660 70.1 2.1e-151 532.3
Cmu02g0440 . 5 368 Nodulin-like Gene Family AT2G16660 67.7 2.6e-141 498.8
Cmu05g2184 . 12 565 Nodulin-like Gene Family AT2G39210 70.6 1.5e-228 789.3
Cmu05g2186 . 3 559 Nodulin-like Gene Family AT2G39210 64.3 1.8e-202 702.6
Cmu03g0880 . 19 575 Nodulin-like Gene Family AT2G39210 59.6 5.7e-188 654.4
Cmu08g0725 . 28 550 Nodulin-like Gene Family AT2G39210 56.2 6.3e-179 624.4
Cmu03g0870 . 1 184 Nodulin-like Gene Family AT2G39210 51.6 6.8e-48 189.1
Cmu07g1108 . 7 565 Nodulin-like Gene Family AT3G01630 52.8 2.7e-147 519.2
Cmu06g0062 . 50 589 Nodulin-like Gene Family AT3G01630 50.4 3.8e-141 498.8
Cmu11g0775 . 6 429 Nodulin-like Gene Family AT3G01930 69.4 5.3e-167 584.3
Cmu06g1699 . 10 537 Nodulin-like Gene Family AT1G18940 54.5 1.2e-165 580.1
Cmu06g1701 . 7 481 Nodulin-like Gene Family AT1G18940 54.6 4.7e-146 515.0
Cmu06g1700 . 3 459 Nodulin-like Gene Family AT1G18940 54.5 1.1e-137 487.3
Cmu06g1699 . 6 539 Nodulin-like Gene Family AT2G34350 56.2 2.0e-160 562.8
Cmu06g1701 . 11 477 Nodulin-like Gene Family AT2G34350 54.7 6.0e-141 498.0
Cmu06g1700 . 8 459 Nodulin-like Gene Family AT2G34350 53.8 1.2e-130 463.8
Cmu03g0880 . 15 569 Nodulin-like Gene Family AT2G28120 70.3 4.0e-223 771.2
Cmu05g2184 . 9 568 Nodulin-like Gene Family AT2G28120 61.8 1.4e-196 682.9
Cmu05g2186 . 9 563 Nodulin-like Gene Family AT2G28120 57.4 1.8e-175 612.8
Cmu03g0877 . 8 581 Nodulin-like Gene Family AT2G28120 54.1 1.1e-167 587.0
Cmu03g0875 . 2 544 Nodulin-like Gene Family AT2G28120 51.0 6.3e-160 561.2
Cmu08g0725 . 24 534 Nodulin-like Gene Family AT2G28120 52.0 6.5e-157 551.2
Cmu03g0879 . 3 545 Nodulin-like Gene Family AT2G28120 50.3 2.2e-144 509.6
Cmu03g0870 . 1 184 Nodulin-like Gene Family AT2G28120 52.1 3.5e-49 193.4
Cmu07g1108 . 4 570 Nodulin-like Gene Family AT1G31470 56.4 1.0e-165 580.5
Cmu06g0062 . 50 596 Nodulin-like Gene Family AT1G31470 56.3 6.8e-162 567.8
Cmu09g0924 . 27 216 Nodulin-like Gene Family AT1G76800 76.8 1.4e-71 266.2
Cmu08g0641 . 17 215 Nodulin-like Gene Family AT1G76800 69.8 5.1e-69 257.7
Cmu09g1420 . 10 202 Nodulin-like Gene Family AT1G76800 62.2 1.1e-58 223.4
Cmu09g1420 . 9 202 Nodulin-like Gene Family AT3G25190 68.5 1.1e-64 243.4
Cmu08g0641 . 23 215 Nodulin-like Gene Family AT3G25190 63.2 7.4e-61 230.7
Cmu09g0924 . 34 216 Nodulin-like Gene Family AT3G25190 63.7 5.9e-58 221.1
Cmu08g0641 . 20 215 Nodulin-like Gene Family AT1G21140 75.5 5.9e-73 270.8
Cmu09g0924 . 29 216 Nodulin-like Gene Family AT1G21140 73.9 4.7e-70 261.2
Cmu09g1420 . 7 202 Nodulin-like Gene Family AT1G21140 61.2 7.3e-63 237.3
Cmu08g0641 . 20 212 Nodulin-like Gene Family AT3G43630 77.2 2.9e-72 268.5
Cmu09g0924 . 29 213 Nodulin-like Gene Family AT3G43630 73.5 6.8e-69 257.3
Cmu09g1420 . 7 199 Nodulin-like Gene Family AT3G43630 61.1 2.2e-59 225.7
Cmu08g0641 . 20 215 Nodulin-like Gene Family AT3G43660 74.0 6.5e-72 267.3
Cmu09g0924 . 25 216 Nodulin-like Gene Family AT3G43660 70.8 3.6e-70 261.5
Cmu09g1420 . 7 202 Nodulin-like Gene Family AT3G43660 61.9 8.0e-62 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002626 0 2 0 0 0 2 1 2 2 2 2 2 1 3 1 2 2 3 1 2 3 5 2 4 4 2 4 2 2 0 58