Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2225 ATGCTCTCGCCGGCGAAGGGCAAGTGCTATCCCACTACAAATAATCAATTTGGGAAAAACTATGTCACTTCAACTGGTCACAACAGCCGCCTAATTGCTCCGATCCCACCAAAAACAGAAGCAAACACCCAAAACACAACTAATATTGCACAAAAACTCCGACAAAATCCATGTGATTCCCAAGCAGAGAAGGAAGGAAGAGAACGGCAGAGATCGGAAGAGCAATTGGCTCGGCACCGTTTGAATATCTCGGCGATCAACTCTCGCATCTATGTTCTCCATTGCCACAAAATGTTCGATTGTGGTGGATACAAGTCGCAGTACATAGGCGGTCACAAGGAGAAATTCGTGAGGTTGGATGATTTGGATTCAAATTTGTCAATGCCCTCTGGAACAAGCAAAATGAAGAAATGTCGATTCAACCTAGAAGGCCTCCCACTGCCATTCATTAGCCGATCGAAGCCACAAAATGCGTCCAAATCGTTCCGAAGAGGAGTTCAAAGGAGCTCCGACGGAATCAAAACCCTCGGTCGGTCGCTCCGCTCCGGCGTGTCCAAAGTCATCTTCCCGGAGGATTTGAAAGTATCGGAACAGAAAATCTTCGATCCGCAAGACAAATCGCTCCTCTTCTGGAATAAGCTTTTCGTGCTGTGCTGCATCCTCGCCGTCTCTGTCGATCCACTCTTCTTCTACCTCCCTGTGTTCAACCATGCCTCTTACTGCCTCGGAATGGACACTCAGCTCGCCGTCACGACCACCACCGTGCGTACGGCCATCGATGTTTTCTACTTGATTCGCATGGCGTTTCAGTTCCGGACGGCTTACATTGCGCCATCGTCAAGAGTATTTGGTCGCGGCGAGCTTGTGATCGATCCGACAGAAATCGCCCAGCGGTATCTTCAGCGCTACTTTGTAGCCGATTTTCTCTCTGTTCTTCCTCTTCCTCAGGTGGTGGTGTGGAGGTTTCTTCACAGGTCAAAAGGCTCGGAAGTTTTAGCCACAAAACAAGCATTGTTAAACATAGTGTTTCTTCAGTATATTCCCAGATTTATTAGATTTATTCCTTTGAACATAGAGCTTAAGAAGACAGCAGGTGTTTTTGCTGAAAGTGCTTGGGCTGGTGCTGCTTACTATCTCCTCTTGTACATGCTTGCCAGCCATATAGCGGGAGCATTCTGGTACTTGCTGGCAGTGGAGAGGAACGATGCATGTTGGCGCCAAGCATGCAGAAGCAGCGGAAAGTGCAACATTAACTATTTGTATTGTGGGAATAAGCACATGTCCGGTTATAAGGATTGGAGAAATATTAGCGTTGAAGTTCTCACTAAGAAATGCACCGCCGTGGGAGACAATTTGCCTTTCAACTATGGCATTTACACTCAGGCCATTTCCTCAGGCATTGTTCAGTCCAGGACTTTCTTCTCCAAGTTCTGCTATTGCTTGTGGTGGGGCTTGCAAAATTTAAGTACACTTGGTCAGGGGCTGCTCACCAGTACCTATCCTGGGGAGGTTATCTTTTCTATCTTAATTGCAATTTCTGGGCTCCTCCTTTTTGCACTCTTGATTGGAAACATGCAAACGTACCTTCAATCTCTAACCGTCCGACTTGAAGAGATGCGCATCAAGAGGAGAGACTCTGAACAATGGATGCACCATCGACTTCTTCCGCCAGACTTGAGAGAAAAAGTTAGGCGCTACGATCAGTACAAATGGCTAGAAACCAGAGGCGTTGATGAAGAGAGCTTGGTTCAAAGTTTGCCTAAAGATCTTAGGAGAGACATTAAACGACATCTCTGTCTCAATTTGGTTAGAAGGGTCCCTCTATTTGCGAACATGGATGAGCGTCTTCTAGACGCAATATGCGAGAGGCTGAAGCCAACATTATACACAGAGAACACATACATAGTACGAGAGGGCGACCCAGTCGACGAAATGCTTTTCATAATCCGTGGCCGCCTAGAGAGCGTCACGACCGACGGCGGCCGGAGCGGCTTCTACAACCGCGGCGTATTAAAAGAAGGCGATTTCTGTGGCGAAGAGCTTTTAACGTGGGCCCTCGACCCGAAGTCCGGCTCCAACCTCCCCTCCTCCACTCGCACTGTCCATGCCCTTACCGAGGTTGAAGCCTTCGCCTTAGAGGCTGAGGAGCTCAAGTTCGTGGCCAGCCAGTTCCGGCGCCTGCATAGCCGGCAGGTTCAACACACCTTCAGATTCTACTCTCAGCAGTGGCGAACCTGGGCATCGTGTTTTATACAGGCGGCGTGGCGGCGGTATTTGAAGCGGAAGATTGCGGAGCTGCGACGGAAGGAGGAGGAAGAAGAGGATGCGGCGGCGGCTGCGGCTGCGTATGGCACGTCGAGGCTTGGGGCTACAATTTTGGCGTCGAGATTTGCGGCGAATGCGCTTAGAGGGCATCGATTGAGAAATGTGAGTGGGAAGAGCTTGATTAACTTGCAGAAGCCGGCGGAGCCTGATTTTTCTGTGTATAAAGGAGAGTAA 2499 49.22 MLSPAKGKCYPTTNNQFGKNYVTSTGHNSRLIAPIPPKTEANTQNTTNIAQKLRQNPCDSQAEKEGRERQRSEEQLARHRLNISAINSRIYVLHCHKMFDCGGYKSQYIGGHKEKFVRLDDLDSNLSMPSGTSKMKKCRFNLEGLPLPFISRSKPQNASKSFRRGVQRSSDGIKTLGRSLRSGVSKVIFPEDLKVSEQKIFDPQDKSLLFWNKLFVLCCILAVSVDPLFFYLPVFNHASYCLGMDTQLAVTTTTVRTAIDVFYLIRMAFQFRTAYIAPSSRVFGRGELVIDPTEIAQRYLQRYFVADFLSVLPLPQVVVWRFLHRSKGSEVLATKQALLNIVFLQYIPRFIRFIPLNIELKKTAGVFAESAWAGAAYYLLLYMLASHIAGAFWYLLAVERNDACWRQACRSSGKCNINYLYCGNKHMSGYKDWRNISVEVLTKKCTAVGDNLPFNYGIYTQAISSGIVQSRTFFSKFCYCLWWGLQNLSTLGQGLLTSTYPGEVIFSILIAISGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPPDLREKVRRYDQYKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPTLYTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFYNRGVLKEGDFCGEELLTWALDPKSGSNLPSSTRTVHALTEVEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWASCFIQAAWRRYLKRKIAELRRKEEEEEDAAAAAAAYGTSRLGATILASRFAANALRGHRLRNVSGKSLINLQKPAEPDFSVYKGE 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28377738 28384541 + CmPI595203_10g022250.1 Cmu10g2225 427755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2225 832 Gene3D Helix hairpin bin 535 599 - -
Cmu10g2225 832 Pfam Cyclic nucleotide-binding domain 629 719 IPR000595 -
Cmu10g2225 832 CDD CAP_ED 608 739 IPR000595 -
Cmu10g2225 832 ProSiteProfiles cAMP/cGMP binding motif profile. 608 738 IPR000595 -
Cmu10g2225 832 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 183 809 - -
Cmu10g2225 832 Gene3D Jelly Rolls 606 726 IPR014710 -
Cmu10g2225 832 Coils Coil 756 779 - -
Cmu10g2225 832 ProSiteProfiles IQ motif profile. 744 773 - -
Cmu10g2225 832 Coils Coil 62 89 - -
Cmu10g2225 832 FunFam Cyclic nucleotide-gated ion channel 1 535 599 - -
Cmu10g2225 832 MobiDBLite consensus disorder prediction 58 75 - -
Cmu10g2225 832 SMART cnmp_10 608 739 IPR000595 -
Cmu10g2225 832 SUPERFAMILY cAMP-binding domain-like 538 728 IPR018490 -
Cmu10g2225 832 FunFam Cyclic nucleotide-gated ion channel 1 606 724 - -
Cmu10g2225 832 SUPERFAMILY Voltage-gated potassium channels 203 530 - -
Cmu10g2225 832 Gene3D - 213 533 - -
Cmu10g2225 832 Pfam Ion transport protein 210 535 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2225 832 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1446 Cmu-Chr2:28208200 Cmu10g2225 Cmu-Chr10:28377738 1.10E-299 dispersed
Cmu05g0096 Cmu-Chr5:894684 Cmu10g2225 Cmu-Chr10:28377738 2.80E-162 dispersed
Cmu05g0097 Cmu-Chr5:901014 Cmu10g2225 Cmu-Chr10:28377738 1.10E-96 dispersed
Cmu05g0099 Cmu-Chr5:906183 Cmu10g2225 Cmu-Chr10:28377738 3.80E-46 dispersed
Cmu05g0986 Cmu-Chr5:9023703 Cmu10g2225 Cmu-Chr10:28377738 1.40E-115 dispersed
Cmu05g0987 Cmu-Chr5:9048192 Cmu10g2225 Cmu-Chr10:28377738 1.60E-111 dispersed
Cmu05g0989 Cmu-Chr5:9060693 Cmu10g2225 Cmu-Chr10:28377738 7.80E-61 dispersed
Cmu05g0990 Cmu-Chr5:9065236 Cmu10g2225 Cmu-Chr10:28377738 7.40E-41 dispersed
Cmu06g1739 Cmu-Chr6:28364609 Cmu10g2225 Cmu-Chr10:28377738 1.60E-181 dispersed
Cmu10g2195 Cmu-Chr10:28034987 Cmu10g2225 Cmu-Chr10:28377738 3.50E-184 dispersed
Cmu10g2225 Cmu-Chr10:28377738 Cmu11g0467 Cmu-Chr11:5173677 1.10E-104 dispersed
Cmu10g2225 Cmu-Chr10:28377738 Cmu01g0049 Cmu-Chr1:422307 3.60E-209 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2225 K05391 - csv:101221166 1366.67