Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2242 ATGATGAAGGTTGTGTTGGTGTTGGTTTCAATGGCTGTTCTTATGCCAACTATAAGAGCTAGCATTGCTGAATATGATGATTTTTTACTCCAAAAGGCTGAAGAAGCCAAACAAGCTTCTCTTGAAGCCTTCCATCCTGATCCCATGAATGTCACTGACCATTTCAACCAACAAGTTCATTTAGCTTTGGAGGGAATAGAAGGAAGCAATAGTACTAGGAGGAGTCTGGCGAAATATAACGGGCCGTGTTTGGCGACGAACCCGATTGACCGTTGTTGGCGTTGTGACCCAAATTGGGCCAAGAACCGTAAGAAACTTGCCACTTGCGTTCTCGGTTTCGGCCGAAAAACCACCGGTGGCAAAAGAGGACGTATCTACGTTGTGTCCGACCCTTCAGATAACGACGTTGTTAACCCTAAACCTGGAACCCTTCGATATGCCGCTATTCAAAAACGGCCACTATGGATTATTTTTGGGCGTAGTATGATCATCAGGCTGACTAAGGAATTGATGGTGGCTAGCCACAAGACCATTGATGCTCGCGGTGCCAATGTTCACATTGCCTATGGGGCTGGTCTTAGCATTCAATTCTCTCGAAATGTGATCATCCACGGCCTACACATCCACCACGTCATTTCAGCCACCGGTGGCTTGATCCGAGACGGCGCTAACCATGTTGGCCTCCGAACGGTCAGTGACGGAGACGGTATCTCCATCTTTGGATCATCCAACATCTGGCTCGATCATCTCTCCATGTCTAACTGCCAAGATGGACTCATCGACGCAATCCAAGGCTCCACTGCAATCACCATCTCAAACTCTCATTTCACTCATCACAACGACGTGATGTTATTCGGTGCAAGTGATTCGTATCAAGGCGACTCGATCATGCAAGTGACCGTCGCATTCAACCATTTCGGGAAGGGATTGGTGCAGAGAATGCCAAGATGCAGATGGGGATTCTTCCATGTGGTCAACAACGATTACACTCATTGGCTCATGTACGCCATTGGTGGCAGTCAACATCCCACCATTATCAGTCAAGGAAACCGTTTCATCGCCCCACCCAACCCTGCTGCAAGACAGATTACCAATAGAAACTATGCACCAGAGAGTGTATGGAGAACATGGACATGGAGATCGGAAGGGGATCTGATGATGAATGGAGCCTATTTCATTCAGTCCGGGAATCCAAGCAAACGAAGGCCATACAGCAGGTTCGACATGATAAAGGCTAAGCCTGGCACCTTTGTTAGAAGGCTTACTCGCTTCTCTGGCTCACTCAACTGTTATGTTGGTCGCCCATGCTAA 1311 47.9 MMKVVLVLVSMAVLMPTIRASIAEYDDFLLQKAEEAKQASLEAFHPDPMNVTDHFNQQVHLALEGIEGSNSTRRSLAKYNGPCLATNPIDRCWRCDPNWAKNRKKLATCVLGFGRKTTGGKRGRIYVVSDPSDNDVVNPKPGTLRYAAIQKRPLWIIFGRSMIIRLTKELMVASHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHVISATGGLIRDGANHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWRTWTWRSEGDLMMNGAYFIQSGNPSKRRPYSRFDMIKAKPGTFVRRLTRFSGSLNCYVGRPC 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28521823 28523401 + CmPI595203_10g022420.1 Cmu10g2242 427772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2242 436 SMART amb_all 161 358 IPR002022 -
Cmu10g2242 436 Pfam Pectate lyase, N terminus 22 76 IPR007524 GO:0030570(InterPro)
Cmu10g2242 436 Pfam Pectate lyase 171 352 IPR002022 -
Cmu10g2242 436 Gene3D - 86 429 IPR012334 -
Cmu10g2242 436 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Cmu10g2242 436 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Cmu10g2242 436 PRINTS Pollen allergen Amb family signature 335 354 IPR018082 -
Cmu10g2242 436 PRINTS Pollen allergen Amb family signature 407 430 IPR018082 -
Cmu10g2242 436 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Cmu10g2242 436 PRINTS Pollen allergen Amb family signature 233 254 IPR018082 -
Cmu10g2242 436 PRINTS Pollen allergen Amb family signature 313 332 IPR018082 -
Cmu10g2242 436 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
Cmu10g2242 436 PANTHER PECTATE LYASE 18-RELATED 15 433 IPR045032 GO:0030570(InterPro)
Cmu10g2242 436 SUPERFAMILY Pectin lyase-like 87 426 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1409 Cmu-Chr1:27595283 Cmu10g2242 Cmu-Chr10:28521823 7.10E-180 dispersed
Cmu08g0842 Cmu-Chr8:20695783 Cmu10g2242 Cmu-Chr10:28521823 1.10E-185 dispersed
Cmu09g1873 Cmu-Chr9:34862403 Cmu10g2242 Cmu-Chr10:28521823 1.00E-127 dispersed
Cmu10g2242 Cmu-Chr10:28521823 Cmu05g2509 Cmu-Chr5:33950432 3.40E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2242 K01728 - csv:101202789 824.313