Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2244 ATGGAGGCGGCGGCTTTGGTACTGAAGAACGAGGAGAATCTGAGAATATGTTGGACAGAAGGTCAAACTCAGGCCATAAGACGTGTCAAGAGACGGCGGAGAGACTCAGCCGCCGCCGATCAAACTAATAAGCAGCAGTGTCTAAAGCAACAATCCGATCAAGCTCCAACCACCACTATGAAGCGGAGTTCAAGATTTCGTGGCGTTAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTATGGGATAAACTTTCTTGGAATATGACACAAAAGAAGAAGGGCAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTCAAGTATTGGGGTGTAACAACCATCACTAACTTCCCTATATCAGAGTATGAGAAAGAGATTGAGATAATGCAAACAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGAGGTGTATCAAAGTATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGGAACAAATACCTCTATCTTGGAACTTACAGCACTCAAGAAGAAGCTGCTCGAGCTTATGATATGGCCGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGTTGAAGCCTCCTCCGCCGCCATCCACCGCCCCAAGTGAAGCCCATATGGCAACAGACCCCCACAAGGAGCTCTGCAACTCCAGCTCCATCCCAGCCGAAGAAACTTCACTCTTCAAAAACCATCACTGCGACATTGATTCCTTTCATTCCCTTCAAAAGCAAGAGCTTCTCGAGAGCTGCAATGCTCCGCTCAATGCTTACGCCAGATCTTCTTCTGCATCAGCACTCGACCTCCTTCTTCGATCATCATTTTTCAAGAAACTGGTGGAGACCAACTCGAATCTCTCTGTGGATGAGGCTGATAATGGGGAAGAGGCGAAGACTCGAGTGCAGCTCGACAGTGTATTTGATGAGTTTGAAGATGTCTTCTGTGACAGAATTACAGATGTACCGTTGGTTTGCAGCTCCAACAAAGAGCTGCAAGAGAGCGAGCTTCATTCTTACTTTAATGGCACATTTCATCGCTTCAAAGCAGCCTGA 1167 46.44 MEAAALVLKNEENLRICWTEGQTQAIRRVKRRRRDSAAADQTNKQQCLKQQSDQAPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPISEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPPPSTAPSEAHMATDPHKELCNSSSIPAEETSLFKNHHCDIDSFHSLQKQELLESCNAPLNAYARSSSASALDLLLRSSFFKKLVETNSNLSVDEADNGEEAKTRVQLDSVFDEFEDVFCDRITDVPLVCSSNKELQESELHSYFNGTFHRFKAA 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28540564 28545131 + CmPI595203_10g022440.1 Cmu10g2244 427774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2244 388 SUPERFAMILY DNA-binding domain 64 130 IPR016177 GO:0003677(InterPro)
Cmu10g2244 388 MobiDBLite consensus disorder prediction 32 66 - -
Cmu10g2244 388 MobiDBLite consensus disorder prediction 40 64 - -
Cmu10g2244 388 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 50 255 - -
Cmu10g2244 388 CDD AP2 163 224 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2244 388 PRINTS Ethylene responsive element binding protein signature 204 224 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2244 388 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2244 388 SMART rav1_2 65 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2244 388 SMART rav1_2 164 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2244 388 FunFam AP2-like ethylene-responsive transcription factor 163 224 - -
Cmu10g2244 388 ProSiteProfiles AP2/ERF domain profile. 164 222 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2244 388 CDD AP2 64 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2244 388 ProSiteProfiles AP2/ERF domain profile. 65 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2244 388 Gene3D AP2/ERF domain 64 130 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2244 388 Gene3D AP2/ERF domain 163 223 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2244 388 Pfam AP2 domain 163 214 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2244 388 Pfam AP2 domain 64 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2244 388 SUPERFAMILY DNA-binding domain 163 224 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0827 Cmu-Chr8:20574635 Cmu10g2244 Cmu-Chr10:28540564 1.10E-68 dispersed
Cmu09g0330 Cmu-Chr9:3157584 Cmu10g2244 Cmu-Chr10:28540564 1.30E-73 dispersed
Cmu10g2244 Cmu-Chr10:28540564 Cmu11g0801 Cmu-Chr11:9496474 3.60E-66 dispersed
Cmu10g2244 Cmu-Chr10:28540564 Cmu05g2265 Cmu-Chr5:32048980 1.40E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7009 PF00847 AP2 2.50E-09 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2244 - - - 0.0