Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu10g2246 | ATGGATTGCTTTGTTTGTCTGAATCAGATCGATCGGCATCATCATCTTCCATCTGTTCTTGATAATCGAATTGCTGATTCTTCAACTCGGATCGCAAAAGAAGACTTTCATATTCTCCGATTCCTTGGCCTTTCTCTTCCTTCGTCTTCAACTGGCCTTGTAAATTCTCTTTCACAGTTCTGCATCGTTAGGTTTCTCTCGGAGGAGGCGTTTGGTTTCTTGCCATTGCTCTCCCCTTCCCTTTCCCCACTCCAGATCTTCTTCTCTTTCATTTCCTTACCGTTTCAATCAAGTTTCCAGAGAATGTATGGTTTTGAAGCGCTTACCTTCAACATTCATGGAGGCTATTTGGAGGCCATCGTCCGTGGACATAGGGCTGGCTTGCTGACCGCCGCTGATTATAACAATTTGTGTCAGTGCGAAACCCTAGATGATATCAAGATGCACCTCTCTGCCACTGAGTATGGTCCTTATCTCCAAAACGAACCATCTCCATTACATACAACAACCATTGTGGAGAAATGCACCCTTAAACTGGTTGACGAGTATAAGCACATGTTGTGCCAAGCCACTGAGCCTCTGTCTACCTTCTTAGAGTATATCACATATGGTCACATGATAGACAATGTTGTCCTTATTGTTACTGGAACCTTGCATGAGAGAGATGTTCAGGAACTGTTGGAGAAGTGCCACCCTTTGGGCATGTTTGACAGCATTGCTACCTTGGCAGTTGCTCAGAATATGCGGGAACTTTATAGATTGGTGCTTGTTGACACCCCTTTGGCTCCATACTTTTCAGAGTGTATCACATCTGAGGATTTGGATGACATGAACATAGAAATTATGAGGAATACTCTCTATAAGGCATACCTAGAGGATTTCTACAGGTTCTGTCAGAAACTGGGTGGTGCCACTGCTGAGATCATGTCTGACCTCCTTGCTTTTGAGGCTGATAGAAGGGCTGTGAATATTACCATAAATAGTATTGGCACTGAGCTTACCCGGGATGATCGAAGGAAGTTGTATTCCAATTTTGGCTTGCTTTATCCCTATGGTCATGAGGAACTTGCAATCTGTGAGGATATTGATCAGGTTCGTGGTGCCATGGAAAAATACCCTCCCTACCAGTCAATTTTTTCCAAGCTATCATATGGTGAGAGCCAGATGCTTGACAAGGCATTCTATGAAGAGGAGGTGAAAAGGCTATGCTTAGCATTTGAGCAACAGTTCCATTATGGTGTTTTCTTTGCATACATGAGGTTGAGGGAACAGGAGATTAGGAACCTAATGTGGATTTCGGAGTGTGTTGCTCAGAACCAGAAGTCGAGGCCTGCGAAACCAAACCAATCACCATCATCACCGTCGATGGACCGGAATCAGAACTTTCCGACCACCATAACCGACTTGGATGAAGATTCTCTCGCTCACTGCGCTTCATTCCTCAAGCGCCACGACATCTTCAATCTCGCCAGCACCTGCAAATATCTTCAACAAGTTGCAAATTCCGACTCCATTTGGCAACGCCTTTTCAGGGAGCGATGGCAGCATCAGTTACCACCTCTTGGTTCTTCCTTAGCTTCAGGAGGAGCTAGGAACGCCTACTTTGCTAGGCTTTCCGATTTGCAACAGTGCAAGTTTGAAGATCCTTTGGTTGCTAGTATCCTCACCCAACCCGAGCCTTATGGCCCCATGCTTTTGGATAGAGATAATATATTCGTTTCTCAGGGCTCCTCAATTCAAATGGTGACTATCACCAAAAATGTTAGCACTCTTGCCACTCTGAATGATCACAATGCGCGTATCACTTGTATGAGGTCGTTTCCCCTTTATGAAACTTCATTTCTTAGAAGTGAAGGACAAAGATCAGGAAATTTTTTGGTAACCTCAAGTTCTGATCACTCAATCCGTTTGTGGTGGAAGGGTTATTGTCAGAAATGTTTTCGAGGTCATAGTGGCCCAGTTTCAATTCTGTCAGATAAACTGTTAGGTGATAGTAACGGCAAATTATTGGCCAGTGGAGGGGAAGATGGTACAGTTCGCCTTTGGTCTCTTAGTTCCAGTGGCAAGCGAGGCAAGAGTGCTTTAAAGGTTACACTACATGGACATGAAAAACCAATTAAATTAATGTCAGTTGCGGGGCATAAGACTTCTCTTTTGGTGAGCATTGCAAGAGACTCCAAGGTAAGAGTTTGGGATGTTACATCAACTATCCGTTCGTCTTGTTGCGTTGGATTAACTTCTCTTCCTGGTGGTCCTATAAACCTTAAGTGCCATGAATCATTGGTCTATGTTGCTACAACTTCCTCTGTTGTTGCAATCGATTTAAGGACTATGCAGAAAGTTCTTACGGCTGCAACTTATCAACCGTTTTTATATTCATTCGAGATGATTCCTTCTAAATCCTTACTATGCACAGGTGGTAGTGGCAGTGCAAAGCTTTGGGATATAAGAAGAAACCAGGATGATCTTAAACCTAAACCTGTAGCTGAATTGGATGGACATAGTGGACCAGTGAGCTTCCTACACATGGATCCCTACAAAGTTGTTACGGGATGCCCAAACGATGTTTATGTACACGTTTGGGAGGTCGATTCAGGCACACCAGCGAATTCTTTGAGTTGCTGGTTCGATGAATATACAGAGGGCAGCACAACATTGTCCTCTATGGCTGTTGATGGGTGTAGATTTGCCACTGCGTCTTATGCTGACACGACGAGGTTGTCTCAAAATTTTGGGTTCCACAATGCTACAACGATGACGATAATTCAAATCTTTAATAAACATCATCTTGAAGTTGAAGCTATTTGGACTCCTTGA | 2817 | 43.73 | MDCFVCLNQIDRHHHLPSVLDNRIADSSTRIAKEDFHILRFLGLSLPSSSTGLVNSLSQFCIVRFLSEEAFGFLPLLSPSLSPLQIFFSFISLPFQSSFQRMYGFEALTFNIHGGYLEAIVRGHRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAICEDIDQVRGAMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRPAKPNQSPSSPSMDRNQNFPTTITDLDEDSLAHCASFLKRHDIFNLASTCKYLQQVANSDSIWQRLFRERWQHQLPPLGSSLASGGARNAYFARLSDLQQCKFEDPLVASILTQPEPYGPMLLDRDNIFVSQGSSIQMVTITKNVSTLATLNDHNARITCMRSFPLYETSFLRSEGQRSGNFLVTSSSDHSIRLWWKGYCQKCFRGHSGPVSILSDKLLGDSNGKLLASGGEDGTVRLWSLSSSGKRGKSALKVTLHGHEKPIKLMSVAGHKTSLLVSIARDSKVRVWDVTSTIRSSCCVGLTSLPGGPINLKCHESLVYVATTSSVVAIDLRTMQKVLTAATYQPFLYSFEMIPSKSLLCTGGSGSAKLWDIRRNQDDLKPKPVAELDGHSGPVSFLHMDPYKVVTGCPNDVYVHVWEVDSGTPANSLSCWFDEYTEGSTTLSSMAVDGCRFATASYADTTRLSQNFGFHNATTMTIIQIFNKHHLEVEAIWTP | 938 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 28548484 | 28559814 | - | CmPI595203_10g022460.1 | Cmu10g2246 | 427776 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu10g2246 | 938 | PRINTS | G protein beta WD-40 repeat signature | 670 | 684 | IPR020472 | - | |
| Cmu10g2246 | 938 | PRINTS | G protein beta WD-40 repeat signature | 626 | 640 | IPR020472 | - | |
| Cmu10g2246 | 938 | PRINTS | G protein beta WD-40 repeat signature | 719 | 733 | IPR020472 | - | |
| Cmu10g2246 | 938 | Pfam | WD domain, G-beta repeat | 641 | 683 | IPR001680 | GO:0005515(InterPro) | |
| Cmu10g2246 | 938 | Pfam | WD domain, G-beta repeat | 591 | 638 | IPR001680 | GO:0005515(InterPro) | |
| Cmu10g2246 | 938 | Pfam | WD domain, G-beta repeat | 697 | 732 | IPR001680 | GO:0005515(InterPro) | |
| Cmu10g2246 | 938 | ProSiteProfiles | F-box domain profile. | 463 | 509 | IPR001810 | GO:0005515(InterPro) | |
| Cmu10g2246 | 938 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 622 | 638 | IPR001680 | GO:0005515(InterPro) | |
| Cmu10g2246 | 938 | SMART | WD40_4 | 692 | 732 | IPR001680 | GO:0005515(InterPro) | |
| Cmu10g2246 | 938 | SMART | WD40_4 | 640 | 683 | IPR001680 | GO:0005515(InterPro) | |
| Cmu10g2246 | 938 | SMART | WD40_4 | 587 | 639 | IPR001680 | GO:0005515(InterPro) | |
| Cmu10g2246 | 938 | SMART | WD40_4 | 777 | 815 | IPR001680 | GO:0005515(InterPro) | |
| Cmu10g2246 | 938 | SMART | WD40_4 | 824 | 862 | IPR001680 | GO:0005515(InterPro) | |
| Cmu10g2246 | 938 | FunFam | V-type proton ATPase subunit | 192 | 306 | - | - | |
| Cmu10g2246 | 938 | PANTHER | VACUOLAR ATP SYNTHASE SUBUNIT AC39 | 102 | 443 | IPR016727 | GO:0007034(PANTHER)|GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cmu10g2246 | 938 | Gene3D | - | 456 | 540 | - | - | |
| Cmu10g2246 | 938 | SUPERFAMILY | V-type ATP synthase subunit C | 115 | 441 | IPR036079 | - | |
| Cmu10g2246 | 938 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 666 | 686 | IPR001680 | GO:0005515(InterPro) | |
| Cmu10g2246 | 938 | Pfam | F-box-like | 478 | 511 | IPR001810 | GO:0005515(InterPro) | |
| Cmu10g2246 | 938 | Pfam | ATP synthase (C/AC39) subunit | 117 | 442 | IPR002843 | GO:0046961(InterPro) | |
| Cmu10g2246 | 938 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 699 | 735 | IPR001680 | GO:0005515(InterPro) | |
| Cmu10g2246 | 938 | Gene3D | - | 790 | 937 | IPR015943 | GO:0005515(InterPro) | |
| Cmu10g2246 | 938 | Gene3D | - | 192 | 300 | IPR035067 | - | |
| Cmu10g2246 | 938 | FunFam | V-type proton ATPase subunit | 307 | 410 | - | - | |
| Cmu10g2246 | 938 | SUPERFAMILY | WD40 repeat-like | 589 | 902 | IPR036322 | GO:0005515(InterPro) | |
| Cmu10g2246 | 938 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 719 | 733 | IPR019775 | - | |
| Cmu10g2246 | 938 | Gene3D | - | 576 | 788 | IPR015943 | GO:0005515(InterPro) | |
| Cmu10g2246 | 938 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 699 | 735 | - | - | |
| Cmu10g2246 | 938 | SUPERFAMILY | F-box domain | 459 | 522 | IPR036047 | GO:0005515(InterPro) | |
| Cmu10g2246 | 938 | Gene3D | ATP synthase (C/AC39) subunit, domain 3 | 115 | 436 | IPR044911 | - | |
| Cmu10g2246 | 938 | FunFam | V-type proton ATPase subunit | 115 | 229 | - | - | |
| Cmu10g2246 | 938 | MobiDBLite | consensus disorder prediction | 441 | 464 | - | - | |
| Cmu10g2246 | 938 | Gene3D | - | 307 | 410 | IPR035067 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu10g2246 | K02146 | - | csv:101203260 | 697.967 |