Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2256 ATGGACTTGACTCCTGCAATTTCCACCGCCGCCGCCACCATTTCCACCGGTGGAGGAGCTGTGAAATCCCCTGAATTCGACACTGAAACCCCCATCAAAATCCAACCCACCACCAAATCTCACCCGTTCACTAACGGCGTCCTCAAGCGCCACCACCACACGGCGCCGCCGCCTCCGCAGGTGGTTTACAAAGAATGCCTCAAGAATCACGCCGCCAGTTTGGGCGGTCATGCTCTAGACGGCTGCGGCGAGTTCATGTCATCCCCCACCGCCACCGCCACCGATCCCACCTCCCTCAAATGCGCTGCTTGCGGTTGCCACCGGAATTTCCACCGCCGTGAACCGGAGGATCCAATCGCTACTCCGACGACAACCCATGTCATTGAGTACCAACCCCATCACCGCCACCACCCACCGCCGCCGCCTGCGGCGGCCCACCGGAGCCCGAGTTCCGCCTCCCCCCCTCCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCCTCTCCGGTGGTTTGCCGGAGAACGCCGGCAGCGGTGGTGGATTCCACCACTCGATTCTGACTCCGAGCCCCAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATATGATTCAAGAATTCTGTAGCGATGTCGGAGTTGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAGAACACTCTCGGGAAAAAAGACGGCGGCCGGAACATCAACGGCAGCGGTGGCGATGGGGATGGCGACGACAAAATTAACGGCGGTGGCGAGCCACACGCCACCGCAAATGGATCGTCTTCTTCCTCTTGA 891 57.46 MDLTPAISTAAATISTGGGAVKSPEFDTETPIKIQPTTKSHPFTNGVLKRHHHTAPPPPQVVYKECLKNHAASLGGHALDGCGEFMSSPTATATDPTSLKCAACGCHRNFHRREPEDPIATPTTTHVIEYQPHHRHHPPPPPAAAHRSPSSASPPPISSSYYPSAPHMLLALSGGLPENAGSGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGDGDGDDKINGGGEPHATANGSSSSS 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28737137 28738027 - CmPI595203_10g022560.1 Cmu10g2256 427786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2256 296 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Cmu10g2256 296 MobiDBLite consensus disorder prediction 131 159 - -
Cmu10g2256 296 MobiDBLite consensus disorder prediction 254 296 - -
Cmu10g2256 296 MobiDBLite consensus disorder prediction 16 59 - -
Cmu10g2256 296 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Cmu10g2256 296 SUPERFAMILY Homeodomain-like 191 259 IPR009057 -
Cmu10g2256 296 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Cmu10g2256 296 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Cmu10g2256 296 FunFam Zinc-finger homeodomain protein 2 187 259 - -
Cmu10g2256 296 Gene3D - 191 259 - -
Cmu10g2256 296 MobiDBLite consensus disorder prediction 30 44 - -
Cmu10g2256 296 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g2256 Cmu-Chr10:28737137 Cmu11g0008 Cmu-Chr11:481676 2.50E-35 dispersed
Cmu04g1075 Cmu-Chr4:25316997 Cmu10g2256 Cmu-Chr10:28737137 3.40E-32 transposed
Cmu10g2256 Cmu-Chr10:28737137 Cmu05g2486 Cmu-Chr5:33738344 5.00E-44 wgd
Cmu10g2256 Cmu-Chr10:28737137 Cmu06g1674 Cmu-Chr6:27811526 1.20E-13 wgd
Cmu10g2256 Cmu-Chr10:28737137 Cmu09g1750 Cmu-Chr9:33520914 1.80E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7011 PF04770 ZF-HD_dimer 7.50E-29 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2256 - - - 0.0