Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu10g2258 | ATGGCGAGAGAGATCCCAAAATCTAGCAATGAAGAAGCGTTCATCTCCTTGGGAAGCGAATACTCCGATCCTCAACAATCCTTCTTCCGCGACCGATTTTACGAACTTTACCCTCCGGAGTTCTCAAGAAAGCTTGTGGCGGAGGTGATTGCGACGTATTTGCTTGTGTTCGTGACGTGTGGGGCGGCGGCATTGAGTGTTGGTCATGAACGGGAAGTGTCGAAGCTTGGAGCATCGATTTCCGGTGGACTGATTGTGACGGTGATGATTTACGCCGTCGGACATATCTCCGGCGCCCATATGAATCCGGCCGTTACTTTTGCTTTTGCTGCTGTTCGGCGATTTCCATGGAACCAGGTTCCACTGTATGCAGCAGCTCAATTCAGTGGAGCTACAACAGCAGCCTTTACATTGCGCATATTATTGGACCCAATTCAAGACTTAGGTACAACTTCACCTTCTGGACCAGCGTCTAAAGCACTCCTCATGGAGATTGTTGTCTCATTCTGTATGATGTTTGTCACATCTGCGGTTGCTACCGACACAAAAGCTATAGGAGAGCTTGGAGGCATAGCAGTGGGGTCAGCTGTATGTATCACATCCATCTTTGCTGGGCCAATATCGGGTGGGTCGATGAACCCAGCAAGGTCAATTGGACCAGCGATTGCAAGTTCACATTACGAAGGGATTTGGGTGTACTTGGTCGGCCCAGTTACTGGTACATTGCTTGGGGCATTTTCATATAACTTCGTACGAGCCACTGAAAAACATACCCATCCACTCTCTTTACATTGA | 795 | 48.68 | MAREIPKSSNEEAFISLGSEYSDPQQSFFRDRFYELYPPEFSRKLVAEVIATYLLVFVTCGAAALSVGHEREVSKLGASISGGLIVTVMIYAVGHISGAHMNPAVTFAFAAVRRFPWNQVPLYAAAQFSGATTAAFTLRILLDPIQDLGTTSPSGPASKALLMEIVVSFCMMFVTSAVATDTKAIGELGGIAVGSAVCITSIFAGPISGGSMNPARSIGPAIASSHYEGIWVYLVGPVTGTLLGAFSYNFVRATEKHTHPLSLH | 264 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 28790745 | 28794163 | - | CmPI595203_10g022580.1 | Cmu10g2258 | 427788 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu10g2258 | 264 | ProSitePatterns | MIP family signature. | 100 | 108 | IPR022357 | - | |
Cmu10g2258 | 264 | PANTHER | AQUAPORIN NIP2-1 | 36 | 256 | IPR034294 | - | |
Cmu10g2258 | 264 | Gene3D | Glycerol uptake facilitator protein. | 18 | 260 | IPR023271 | - | |
Cmu10g2258 | 264 | SUPERFAMILY | Aquaporin-like | 34 | 258 | IPR023271 | - | |
Cmu10g2258 | 264 | PRINTS | Major intrinsic protein family signature | 194 | 216 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cmu10g2258 | 264 | PRINTS | Major intrinsic protein family signature | 82 | 106 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cmu10g2258 | 264 | PRINTS | Major intrinsic protein family signature | 231 | 251 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cmu10g2258 | 264 | PRINTS | Major intrinsic protein family signature | 43 | 62 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cmu10g2258 | 264 | PRINTS | Major intrinsic protein family signature | 119 | 138 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cmu10g2258 | 264 | PRINTS | Major intrinsic protein family signature | 163 | 181 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cmu10g2258 | 264 | Pfam | Major intrinsic protein | 39 | 248 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g1196 | Cmu-Chr5:12081392 | Cmu10g2258 | Cmu-Chr10:28790745 | 8.20E-54 | dispersed | |
Cmu10g2258 | Cmu-Chr10:28790745 | Cmu10g2259 | Cmu-Chr10:28827416 | 1.60E-97 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu10g2258 | K09874 | - | csv:101205456 | 424.091 |