Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2275 ATGTCGGAGCCAAAAGATCCGGCGATCAAGCTCTTTGGCAAGACGATTCCTCTACCTGAGGCTTCTCCGGCCACTCCTCAGCTTCCATCTTCTTTACCTATTCTCACACCCGGTGACGATAACACCGCCGCTGTTGATCATGACCACGATTCTTCTTCTTCAAGCTTGTCCCCGGAAGCCAATATCGATGGGGATGCTGAAGATCTGGAGGTCGATAAGGAGACTATAAGAGGAAAATCAGGTGGAACTAAGCTGGAAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGCGATGGAGATGGAGGCTTATCTGTTTCGACCGAAGAGTTTACTAATTCGGATACTTCTGCAGTGAGATCAGAGAATTCTAAAGTACTTTCTGGTGAGGAAAGTAATCCGTCAAGTACTACAAAGACTGATGAACAGAATGAAACAAGTAACTCGCAAGAGAAGACTCTCAAGAAACCCGACAAGATACTTCCGTGCCCCCGCTGTAACAGCATGGATACCAAGTTCTGTTATTATAATAACTACAATGTCAATCAACCGCGCCACTTTTGTAAGAACTGTCAAAGGTATTGGACTGCTGGAGGGACAATGAGGAATGTTCCTGTGGGTGCCGGACGTCGTAAGAACAAAAGCTCTGCTTCTCACCATCGTCAGATTATTGTTTCAGAATCGCTTCAGCATGCTCGAACTGATGTTTCTAATGGTATCCATCATTCTGCCCTCAAACCTAATGGCAATGTATTGGCATTTGGTTCAGATGCCCCTCTTTGTGAATCAATGGCTTCCATTTTGAACATTGCTGATAAAACAAGGCAGAATAGTACTAGAAATGGTTTTCAAAAACCTGAAGCTCTGAAAATTCCTGTGGCTTATGAGAATGGTGAAAATGATGATCAGTCTCAGGAATCTGCTGCAACTCCATCATTTATAAATAATGAAGAAGGCAAAACTGGGCCACAAGATCAAGTGATTCATAATTGTCAAGGCTTTTTACCTCCTCAGATTCCATTCTTCCCTGGGGCTCCTTGGCCTTACCCTTGGAATTCACCACAATGGAGCTCTCCTGTTCCACCTCCTACTTTCTATCCACCAGGCATCCCTATGCCGTTCTATCCGACCGCCCCGTTTTGGGGTTGTACCGTTCCCGGCGCCTGGACAGTCCCGTGGGTTTCCCAGCCACCATCTCTGAGCCCTGTTGCCCAAAACCATGCTCCCAACTCTCCAACCTTGGGGAAACATTCAAGAGATGAGAATGTGACCAAGCAAAGCGATTTTGGGGAAGACGAGCAGCAGAAAGATAACAAAGCTGAGAGATGTCTTTGGATACCAAAAACGTTGAGGATTGACGACCCCGGCGAAGCAGCTAAAAGCTCCATATGGGCAACTCTGGGAATAAAAAATGACAAGACTGATTCAGTCAGTGAAGGGCTTTTCAAGGCTTTTCAATCAAAGAAGACCAACGGAAAGAATCACAAAGCCGAAGCCTCTCCAGTCTTGCAAGTCAATCCAGCTGCATTGTCCAGATCAATCAAATTTCATGAAAGCTCGTAA 1575 45.78 MSEPKDPAIKLFGKTIPLPEASPATPQLPSSLPILTPGDDNTAAVDHDHDSSSSSLSPEANIDGDAEDLEVDKETIRGKSGGTKLEDGDGDGDGDGDGDGDGDGDGGLSVSTEEFTNSDTSAVRSENSKVLSGEESNPSSTTKTDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSASHHRQIIVSESLQHARTDVSNGIHHSALKPNGNVLAFGSDAPLCESMASILNIADKTRQNSTRNGFQKPEALKIPVAYENGENDDQSQESAATPSFINNEEGKTGPQDQVIHNCQGFLPPQIPFFPGAPWPYPWNSPQWSSPVPPPTFYPPGIPMPFYPTAPFWGCTVPGAWTVPWVSQPPSLSPVAQNHAPNSPTLGKHSRDENVTKQSDFGEDEQQKDNKAERCLWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDSVSEGLFKAFQSKKTNGKNHKAEASPVLQVNPAALSRSIKFHESS 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29007051 29009151 - CmPI595203_10g022750.1 Cmu10g2275 427805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2275 524 MobiDBLite consensus disorder prediction 1 165 - -
Cmu10g2275 524 MobiDBLite consensus disorder prediction 422 444 - -
Cmu10g2275 524 MobiDBLite consensus disorder prediction 403 444 - -
Cmu10g2275 524 MobiDBLite consensus disorder prediction 403 421 - -
Cmu10g2275 524 MobiDBLite consensus disorder prediction 110 148 - -
Cmu10g2275 524 MobiDBLite consensus disorder prediction 302 327 - -
Cmu10g2275 524 ProSiteProfiles Zinc finger Dof-type profile. 165 219 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu10g2275 524 MobiDBLite consensus disorder prediction 149 163 - -
Cmu10g2275 524 Pfam Dof domain, zinc finger 163 219 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu10g2275 524 ProSitePatterns Zinc finger Dof-type signature. 167 203 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu10g2275 524 MobiDBLite consensus disorder prediction 70 89 - -
Cmu10g2275 524 PANTHER CYCLIC DOF FACTOR 2 1 524 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1258 Cmu-Chr4:27030053 Cmu10g2275 Cmu-Chr10:29007051 8.60E-77 dispersed
Cmu08g1487 Cmu-Chr8:26842134 Cmu10g2275 Cmu-Chr10:29007051 2.20E-24 dispersed
Cmu10g2275 Cmu-Chr10:29007051 Cmu10g2341 Cmu-Chr10:29720011 3.80E-55 dispersed
Cmu10g2275 Cmu-Chr10:29007051 Cmu05g2476 Cmu-Chr5:33691447 2.90E-71 wgd
Cmu10g2275 Cmu-Chr10:29007051 Cmu06g1666 Cmu-Chr6:27764825 6.70E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7012 PF02701 zf-Dof 2.30E-32 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2275 - - - 0.0