Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu10g2275 | ATGTCGGAGCCAAAAGATCCGGCGATCAAGCTCTTTGGCAAGACGATTCCTCTACCTGAGGCTTCTCCGGCCACTCCTCAGCTTCCATCTTCTTTACCTATTCTCACACCCGGTGACGATAACACCGCCGCTGTTGATCATGACCACGATTCTTCTTCTTCAAGCTTGTCCCCGGAAGCCAATATCGATGGGGATGCTGAAGATCTGGAGGTCGATAAGGAGACTATAAGAGGAAAATCAGGTGGAACTAAGCTGGAAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGCGATGGAGATGGAGGCTTATCTGTTTCGACCGAAGAGTTTACTAATTCGGATACTTCTGCAGTGAGATCAGAGAATTCTAAAGTACTTTCTGGTGAGGAAAGTAATCCGTCAAGTACTACAAAGACTGATGAACAGAATGAAACAAGTAACTCGCAAGAGAAGACTCTCAAGAAACCCGACAAGATACTTCCGTGCCCCCGCTGTAACAGCATGGATACCAAGTTCTGTTATTATAATAACTACAATGTCAATCAACCGCGCCACTTTTGTAAGAACTGTCAAAGGTATTGGACTGCTGGAGGGACAATGAGGAATGTTCCTGTGGGTGCCGGACGTCGTAAGAACAAAAGCTCTGCTTCTCACCATCGTCAGATTATTGTTTCAGAATCGCTTCAGCATGCTCGAACTGATGTTTCTAATGGTATCCATCATTCTGCCCTCAAACCTAATGGCAATGTATTGGCATTTGGTTCAGATGCCCCTCTTTGTGAATCAATGGCTTCCATTTTGAACATTGCTGATAAAACAAGGCAGAATAGTACTAGAAATGGTTTTCAAAAACCTGAAGCTCTGAAAATTCCTGTGGCTTATGAGAATGGTGAAAATGATGATCAGTCTCAGGAATCTGCTGCAACTCCATCATTTATAAATAATGAAGAAGGCAAAACTGGGCCACAAGATCAAGTGATTCATAATTGTCAAGGCTTTTTACCTCCTCAGATTCCATTCTTCCCTGGGGCTCCTTGGCCTTACCCTTGGAATTCACCACAATGGAGCTCTCCTGTTCCACCTCCTACTTTCTATCCACCAGGCATCCCTATGCCGTTCTATCCGACCGCCCCGTTTTGGGGTTGTACCGTTCCCGGCGCCTGGACAGTCCCGTGGGTTTCCCAGCCACCATCTCTGAGCCCTGTTGCCCAAAACCATGCTCCCAACTCTCCAACCTTGGGGAAACATTCAAGAGATGAGAATGTGACCAAGCAAAGCGATTTTGGGGAAGACGAGCAGCAGAAAGATAACAAAGCTGAGAGATGTCTTTGGATACCAAAAACGTTGAGGATTGACGACCCCGGCGAAGCAGCTAAAAGCTCCATATGGGCAACTCTGGGAATAAAAAATGACAAGACTGATTCAGTCAGTGAAGGGCTTTTCAAGGCTTTTCAATCAAAGAAGACCAACGGAAAGAATCACAAAGCCGAAGCCTCTCCAGTCTTGCAAGTCAATCCAGCTGCATTGTCCAGATCAATCAAATTTCATGAAAGCTCGTAA | 1575 | 45.78 | MSEPKDPAIKLFGKTIPLPEASPATPQLPSSLPILTPGDDNTAAVDHDHDSSSSSLSPEANIDGDAEDLEVDKETIRGKSGGTKLEDGDGDGDGDGDGDGDGDGDGGLSVSTEEFTNSDTSAVRSENSKVLSGEESNPSSTTKTDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSASHHRQIIVSESLQHARTDVSNGIHHSALKPNGNVLAFGSDAPLCESMASILNIADKTRQNSTRNGFQKPEALKIPVAYENGENDDQSQESAATPSFINNEEGKTGPQDQVIHNCQGFLPPQIPFFPGAPWPYPWNSPQWSSPVPPPTFYPPGIPMPFYPTAPFWGCTVPGAWTVPWVSQPPSLSPVAQNHAPNSPTLGKHSRDENVTKQSDFGEDEQQKDNKAERCLWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDSVSEGLFKAFQSKKTNGKNHKAEASPVLQVNPAALSRSIKFHESS | 524 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 29007051 | 29009151 | - | CmPI595203_10g022750.1 | Cmu10g2275 | 427805 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu10g2275 | 524 | MobiDBLite | consensus disorder prediction | 1 | 165 | - | - | |
Cmu10g2275 | 524 | MobiDBLite | consensus disorder prediction | 422 | 444 | - | - | |
Cmu10g2275 | 524 | MobiDBLite | consensus disorder prediction | 403 | 444 | - | - | |
Cmu10g2275 | 524 | MobiDBLite | consensus disorder prediction | 403 | 421 | - | - | |
Cmu10g2275 | 524 | MobiDBLite | consensus disorder prediction | 110 | 148 | - | - | |
Cmu10g2275 | 524 | MobiDBLite | consensus disorder prediction | 302 | 327 | - | - | |
Cmu10g2275 | 524 | ProSiteProfiles | Zinc finger Dof-type profile. | 165 | 219 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cmu10g2275 | 524 | MobiDBLite | consensus disorder prediction | 149 | 163 | - | - | |
Cmu10g2275 | 524 | Pfam | Dof domain, zinc finger | 163 | 219 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cmu10g2275 | 524 | ProSitePatterns | Zinc finger Dof-type signature. | 167 | 203 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cmu10g2275 | 524 | MobiDBLite | consensus disorder prediction | 70 | 89 | - | - | |
Cmu10g2275 | 524 | PANTHER | CYCLIC DOF FACTOR 2 | 1 | 524 | IPR045174 | GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu04g1258 | Cmu-Chr4:27030053 | Cmu10g2275 | Cmu-Chr10:29007051 | 8.60E-77 | dispersed | |
Cmu08g1487 | Cmu-Chr8:26842134 | Cmu10g2275 | Cmu-Chr10:29007051 | 2.20E-24 | dispersed | |
Cmu10g2275 | Cmu-Chr10:29007051 | Cmu10g2341 | Cmu-Chr10:29720011 | 3.80E-55 | dispersed | |
Cmu10g2275 | Cmu-Chr10:29007051 | Cmu05g2476 | Cmu-Chr5:33691447 | 2.90E-71 | wgd | |
Cmu10g2275 | Cmu-Chr10:29007051 | Cmu06g1666 | Cmu-Chr6:27764825 | 6.70E-100 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
7012 | PF02701 | zf-Dof | 2.30E-32 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu10g2275 | - | - | - | 0.0 |