Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu10g2325 | ATGGTACCCTCCCAGGCCATCCAAATTCCGGAGGACAACATAGTCTTGGTTGCAGTTTCCATGGCTTCTTCGTCCTCTGATCCTGGCTTCAAACCCGAACCCGGTGCTTGTAGTGCTGCTGCTGCTGCCGGAAGAGGAACGGCGGAATCTTCCGAGGTTGTAATGGCGAATGATCAGCTTCTACTGTACAGAGGGTTGAAGAAAGCGAAGAAAGAGAGAGGTTGCACTGCTAAAGAACGCATCAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGCTCGATATACCGCGGAGTCACTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAGAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGGAGCATATGATGAAGAAGAGGCTGCTGCTAGGGCATACGATCTGGCTGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACAAGGGACCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCTCTAAGGAGAAAGAGCAGTGGATTCTCCAGGGGAATATCCAAATATCGTGGTCTCTCAAGTCGATGGGAGCCTTCATTTGGTCGTACGCCGGGTCCTGATTATGTTAACAGCATAAATTATGGTGCTGGAGATGATCAAGCAACTGAAAGTGAATTTGTCCCCAGCTTCTGCATTGAAAGGAAGATTGACTTAACAAGTCACATTAAGTGGTGGGGGCCCAACAAAACTCGAACGGCCAGTGCTGGCTCGAAGTCATCAGAAGAAGACAAAAATAGTTGTGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTGGGACAGACCGCCCATCCTACAGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGAGTAAAGAAGGCTGCTTCCAAGGTCTCTGCTTTAAGCATTTTGTCACGGTCAGCAGCCTACAAGAGTTTGCAGGAGAAAGCTTTGAAATTACAGGAAATTAACAACGAGAATGATGAGAATGAAAATAAAAACACTGTTAACAAGGCAGATCATGGGAAAGTGGTCGAAACACATACAAGTCATGGTGGTGATCCCAGTGAGAGATTTGGGGTTGCTTTCGGAACAAGTGGTGGATTGCCACTTCAGAGAAATGTGTTCCCCTTGACTCCATTCTTAACAGCACCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGACCCGATTCATTGGACATCTCTCGTCTCTGTTCTTCCTAGTGGACTTTCTCGTACAGCTGAGGTTACAAAAACTGAAACGTCTTCAACTTACACTTTGTTTCGGCCTGAGGAATAA | 1350 | 46.0 | MVPSQAIQIPEDNIVLVAVSMASSSSDPGFKPEPGACSAAAAAGRGTAESSEVVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWEPSFGRTPGPDYVNSINYGAGDDQATESEFVPSFCIERKIDLTSHIKWWGPNKTRTASAGSKSSEEDKNSCAGEVGSELKALGQTAHPTEPYEMPCLGTLHGVKKAASKVSALSILSRSAAYKSLQEKALKLQEINNENDENENKNTVNKADHGKVVETHTSHGGDPSERFGVAFGTSGGLPLQRNVFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPSGLSRTAEVTKTETSSTYTLFRPEE | 449 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 29517384 | 29522604 | - | CmPI595203_10g023250.1 | Cmu10g2325 | 427855 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu10g2325 | 449 | Pfam | AP2 domain | 96 | 150 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu10g2325 | 449 | FunFam | AP2-like ethylene-responsive transcription factor | 94 | 160 | - | - | |
Cmu10g2325 | 449 | Gene3D | AP2/ERF domain | 95 | 160 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu10g2325 | 449 | SUPERFAMILY | DNA-binding domain | 94 | 159 | IPR016177 | GO:0003677(InterPro) | |
Cmu10g2325 | 449 | PRINTS | Ethylene responsive element binding protein signature | 96 | 107 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu10g2325 | 449 | PRINTS | Ethylene responsive element binding protein signature | 140 | 160 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu10g2325 | 449 | SMART | rav1_2 | 95 | 164 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu10g2325 | 449 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 63 | 286 | - | - | |
Cmu10g2325 | 449 | MobiDBLite | consensus disorder prediction | 255 | 275 | - | - | |
Cmu10g2325 | 449 | Coils | Coil | 324 | 352 | - | - | |
Cmu10g2325 | 449 | ProSiteProfiles | AP2/ERF domain profile. | 95 | 158 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu10g2325 | Cmu-Chr10:29517384 | Cmu11g0801 | Cmu-Chr11:9496474 | 1.10E-42 | dispersed | |
Cmu10g2325 | Cmu-Chr10:29517384 | Cmu05g2265 | Cmu-Chr5:32048980 | 1.90E-50 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
7016 | PF00847 | AP2 | 7.30E-10 | CL0081 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu10g2325 | K09285 | - | csv:101206434 | 764.222 |