Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2325 ATGGTACCCTCCCAGGCCATCCAAATTCCGGAGGACAACATAGTCTTGGTTGCAGTTTCCATGGCTTCTTCGTCCTCTGATCCTGGCTTCAAACCCGAACCCGGTGCTTGTAGTGCTGCTGCTGCTGCCGGAAGAGGAACGGCGGAATCTTCCGAGGTTGTAATGGCGAATGATCAGCTTCTACTGTACAGAGGGTTGAAGAAAGCGAAGAAAGAGAGAGGTTGCACTGCTAAAGAACGCATCAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGCTCGATATACCGCGGAGTCACTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAGAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGGAGCATATGATGAAGAAGAGGCTGCTGCTAGGGCATACGATCTGGCTGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACAAGGGACCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCTCTAAGGAGAAAGAGCAGTGGATTCTCCAGGGGAATATCCAAATATCGTGGTCTCTCAAGTCGATGGGAGCCTTCATTTGGTCGTACGCCGGGTCCTGATTATGTTAACAGCATAAATTATGGTGCTGGAGATGATCAAGCAACTGAAAGTGAATTTGTCCCCAGCTTCTGCATTGAAAGGAAGATTGACTTAACAAGTCACATTAAGTGGTGGGGGCCCAACAAAACTCGAACGGCCAGTGCTGGCTCGAAGTCATCAGAAGAAGACAAAAATAGTTGTGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTGGGACAGACCGCCCATCCTACAGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGAGTAAAGAAGGCTGCTTCCAAGGTCTCTGCTTTAAGCATTTTGTCACGGTCAGCAGCCTACAAGAGTTTGCAGGAGAAAGCTTTGAAATTACAGGAAATTAACAACGAGAATGATGAGAATGAAAATAAAAACACTGTTAACAAGGCAGATCATGGGAAAGTGGTCGAAACACATACAAGTCATGGTGGTGATCCCAGTGAGAGATTTGGGGTTGCTTTCGGAACAAGTGGTGGATTGCCACTTCAGAGAAATGTGTTCCCCTTGACTCCATTCTTAACAGCACCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGACCCGATTCATTGGACATCTCTCGTCTCTGTTCTTCCTAGTGGACTTTCTCGTACAGCTGAGGTTACAAAAACTGAAACGTCTTCAACTTACACTTTGTTTCGGCCTGAGGAATAA 1350 46.0 MVPSQAIQIPEDNIVLVAVSMASSSSDPGFKPEPGACSAAAAAGRGTAESSEVVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWEPSFGRTPGPDYVNSINYGAGDDQATESEFVPSFCIERKIDLTSHIKWWGPNKTRTASAGSKSSEEDKNSCAGEVGSELKALGQTAHPTEPYEMPCLGTLHGVKKAASKVSALSILSRSAAYKSLQEKALKLQEINNENDENENKNTVNKADHGKVVETHTSHGGDPSERFGVAFGTSGGLPLQRNVFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPSGLSRTAEVTKTETSSTYTLFRPEE 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29517384 29522604 - CmPI595203_10g023250.1 Cmu10g2325 427855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2325 449 Pfam AP2 domain 96 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2325 449 FunFam AP2-like ethylene-responsive transcription factor 94 160 - -
Cmu10g2325 449 Gene3D AP2/ERF domain 95 160 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2325 449 SUPERFAMILY DNA-binding domain 94 159 IPR016177 GO:0003677(InterPro)
Cmu10g2325 449 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2325 449 PRINTS Ethylene responsive element binding protein signature 140 160 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2325 449 SMART rav1_2 95 164 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2325 449 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 63 286 - -
Cmu10g2325 449 MobiDBLite consensus disorder prediction 255 275 - -
Cmu10g2325 449 Coils Coil 324 352 - -
Cmu10g2325 449 ProSiteProfiles AP2/ERF domain profile. 95 158 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g2325 Cmu-Chr10:29517384 Cmu11g0801 Cmu-Chr11:9496474 1.10E-42 dispersed
Cmu10g2325 Cmu-Chr10:29517384 Cmu05g2265 Cmu-Chr5:32048980 1.90E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7016 PF00847 AP2 7.30E-10 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2325 K09285 - csv:101206434 764.222