Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2332 ATGGCCGACGCCGACCAATTCCCTCGCCGGAAACCCCTTGGAAATAAGCGAGCCTCCGCAGCCAATAGAAACCCCGACTCCGCCACTGCCACCGTCACCGCCCTGGCTCCTTGTGGCGCATGCAAGTTTCTCAGAAGAAAATGTGTCAGTGGATGTATCTTTGCACCACATTTCGCCTCCGATCAAGGCGCCGCCCGATTCGCTGCCGTGCATAAGGTCTTTGGAGCTAGCAACGTGTCGAAGCTGCTGCTTCATATTCCGGTCAGTCGTCGAAATGACGCTGTTGTTACCATTTCTTATGAGGCTCAGGCCAGATTATCCGACCCTGTCTATGGATGTGTCTCTACTGTCCTTGCCTTACAACAACAGGTGGCATCTCTGCAGGCAGAGCTAGCCGCGGTTCAAGCTCAATTGATAAGCAGCAGGTTGGCATTTGCAGCTGCGATTCAGAACTCACAGCCATCCCAAGTCGGAGCGTTGCAGCCAGCTTACTCTAACAACTCCTCCATCTCCGTCTCCGCCTCTACCTCTGCTCATAATGCAATCAATTTGAGTAGTTTTGCTTCCAATTACGACCTTCCGACCGAGACTGCCCCATCTCCCCATCACCTAGAGCCTCTTCACCTCCCCCATCAACCGATCGAAGATGAGGAAGACGAGGAAAATAGCCAGTTGCCAGCCATCTTCGCCGATTAA 696 53.3 MADADQFPRRKPLGNKRASAANRNPDSATATVTALAPCGACKFLRRKCVSGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQAQLISSRLAFAAAIQNSQPSQVGALQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPHQPIEDEEDEENSQLPAIFAD 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29591422 29593537 - CmPI595203_10g023320.1 Cmu10g2332 427862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2332 231 ProSiteProfiles LOB domain profile. 36 138 IPR004883 -
Cmu10g2332 231 PANTHER LOB DOMAIN CONTAINING PROTEIN 35 191 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cmu10g2332 231 MobiDBLite consensus disorder prediction 1 26 - -
Cmu10g2332 231 Pfam Lateral organ boundaries (LOB) domain 37 135 IPR004883 -
Cmu10g2332 231 Coils Coil 117 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g0771 Cmu-Chr9:7339267 Cmu10g2332 Cmu-Chr10:29591422 1.00E-34 dispersed
Cmu10g2332 Cmu-Chr10:29591422 Cmu11g0609 Cmu-Chr11:6658568 5.00E-23 dispersed
Cmu10g2332 Cmu-Chr10:29591422 Cmu06g0034 Cmu-Chr6:357722 2.70E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7018 PF03195 LOB 1.70E-37 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2332 - - - 0.0