Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2355 ATGGTTATGGCTACCGATTCCCAATTCCATGTTCTTGCCGTCGATGATAGCCTCATAGATAGAAAACTCATCGAAAGGCTTCTCAAAACCTCCTCCTATCAAGTTACTACGGTTGATTCTGGTAGCAAGGCCTTGGAATTTCTTGGTCTGATTCAAGAACATCAACATACAAACTTCAAATCCCCTTCTCCTTCTCCTTCTTTTTCCTCCTCCAACAATCATCACCAGGAAGTGGAAGTGAATCTTATCATCACTGATTACTGTATGCCTGGAATGACTGGCTTCGATTTGCTCAAGAAAGTTAAGGAATCATCGTCGCTTAGAAACATACCAGTGGTGATAATGTCATCGGAAAACGTACCTTCGAGAATCAGCAGATGTTTGGAAGAAGGCGCGGAAGAGTTCTTCCTGAAGCCAGTTCGATTGTGCGATGTGAATAAACTGAAACCGCATATGATGAAGACGAAGTTGATGGAGGATCAAAATCAAGAAGAAGAAGAAACAACAGCAACAGAGATCGAATTGGAATCGGTAGAAAAAGAAGAAGAAGAGGAAGAGTTTGAGTTTGAGATGAGTAAGAAGAGAAAGGGAGGTGTGGATGAAGAAAGTGTGGAGACGGAGAGAAGAAGAAGAAGGTTCGACAACAATGGCGTCGCGACGGTGATTTGA 669 42.6 MVMATDSQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLIQEHQHTNFKSPSPSPSFSSSNNHHQEVEVNLIITDYCMPGMTGFDLLKKVKESSSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLCDVNKLKPHMMKTKLMEDQNQEEEETTATEIELESVEKEEEEEEFEFEMSKKRKGGVDEESVETERRRRRFDNNGVATVI 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29898023 29899281 - CmPI595203_10g023550.1 Cmu10g2355 427885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2355 222 MobiDBLite consensus disorder prediction 187 215 - -
Cmu10g2355 222 MobiDBLite consensus disorder prediction 158 222 - -
Cmu10g2355 222 Gene3D - 10 216 - -
Cmu10g2355 222 CDD REC_typeA_ARR 11 148 - -
Cmu10g2355 222 Pfam Response regulator receiver domain 74 142 IPR001789 GO:0000160(InterPro)
Cmu10g2355 222 Coils Coil 161 181 - -
Cmu10g2355 222 SUPERFAMILY CheY-like 8 166 IPR011006 -
Cmu10g2355 222 SMART REC_2 9 148 IPR001789 GO:0000160(InterPro)
Cmu10g2355 222 MobiDBLite consensus disorder prediction 164 186 - -
Cmu10g2355 222 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 196 IPR045279 GO:0009736(InterPro)
Cmu10g2355 222 ProSiteProfiles Response regulatory domain profile. 10 153 IPR001789 GO:0000160(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2355 K14492 - - csv:101220810 308.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0488 Cmu-Chr4:16934590 Cmu10g2355 Cmu-Chr10:29898023 1.20E-54 dispersed
Cmu05g2725 Cmu-Chr5:35717799 Cmu10g2355 Cmu-Chr10:29898023 1.00E-50 dispersed
Cmu06g1714 Cmu-Chr6:28166954 Cmu10g2355 Cmu-Chr10:29898023 1.10E-38 dispersed
Cmu07g0570 Cmu-Chr7:7031110 Cmu10g2355 Cmu-Chr10:29898023 1.80E-40 dispersed
Cmu08g0531 Cmu-Chr8:17251012 Cmu10g2355 Cmu-Chr10:29898023 1.70E-39 dispersed
Cmu10g2355 Cmu-Chr10:29898023 Cmu05g2549 Cmu-Chr5:34264382 1.90E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1179 . . . Bda03g00627 Bpe04g01386 . Bma04g01468 Bma10g00231 . . Cma03g00130 Cma07g01364 Car03g00131 Car07g01312 Sed14g0018 . . Bhi03g02471 Tan03g0466 Cmetu08g0497 . Hepe04g0485 . . Cla04g00444 Cam04g0440 Cec04g0555 Cco04g0576 Clacu04g0453 Cmu04g0488 Cre04g0540 Cone3ag0023 . Cone13ag0617 Cone19ag0548 Lsi01g01790 Csa04g01951 . Cme04g02093 . . . . Bpe04g00591 . . . Sed02g0819 Cmo03g00167 Cmo07g01403 . . . Car14g00475 Cpe03g00456 . Bhi11g02832 Tan08g1252 Cmetu04g1441 . Hepe05g0710 . . Cla10g01535 Cam10g1583 Cec10g1628 Cco10g1598 Clacu10g1595 Cmu10g2355 Cre10g1736 Lsi03g01597 Csa03g03727 . Cme08g01358
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g1681 . 336 540 Response Regulator Gene Family AT3G16857 53.8 2.3e-54 210.7
Cmu11g0338 . 411 738 Response Regulator Gene Family AT4G31920 51.2 6.2e-80 295.4
Cmu06g0463 . 78 333 Response Regulator Gene Family AT4G31920 55.5 1.1e-71 268.1
Cmu05g0703 . 16 271 Response Regulator Gene Family AT4G31920 54.1 9.9e-70 261.5
Cmu08g1681 . 295 543 Response Regulator Gene Family AT4G31920 50.4 4.5e-62 236.1
Cmu05g0703 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.7e-40 164.1
Cmu05g1682 . 93 255 Response Regulator Gene Family AT1G67710 53.8 3.0e-40 163.3
Cmu06g1276 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.2e-102 368.6
Cmu11g0338 . 413 757 Response Regulator Gene Family AT2G25180 55.2 6.9e-85 312.0
Cmu05g0703 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cmu08g1681 . 295 540 Response Regulator Gene Family AT2G25180 55.6 9.0e-69 258.5
Cmu06g0463 . 141 374 Response Regulator Gene Family AT2G01760 51.4 7.5e-54 208.0
Cmu06g1276 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.2e-49 191.4
Cmu08g1681 . 356 543 Response Regulator Gene Family AT2G01760 51.0 3.6e-48 189.1
Cmu08g1681 . 293 542 Response Regulator Gene Family AT5G58080 50.6 6.7e-62 235.7
Cmu06g0463 . 79 304 Response Regulator Gene Family AT4G16110 66.7 2.2e-79 293.9
Cmu05g0703 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.7e-79 293.1
Cmu05g1682 . 12 233 Response Regulator Gene Family AT4G16110 60.2 2.0e-61 234.2
Cmu08g1681 . 294 519 Response Regulator Gene Family AT4G16110 54.5 9.4e-59 225.3
Cmu06g1276 . 17 249 Response Regulator Gene Family AT4G16110 53.8 8.8e-57 218.8
Cmu11g0338 . 416 664 Response Regulator Gene Family AT4G16110 51.7 2.3e-52 204.1
Cmu06g1714 . 16 177 Response Regulator Gene Family AT3G48100 69.3 9.7e-54 206.8
Cmu05g2549 . 29 162 Response Regulator Gene Family AT3G48100 71.6 2.2e-50 195.7
Cmu01g0720 . 11 151 Response Regulator Gene Family AT3G48100 61.0 5.5e-41 164.5
Cmu04g0488 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.1e-40 162.5
Cmu05g2725 . 4 168 Response Regulator Gene Family AT3G48100 53.9 1.0e-39 160.2
Cmu10g2355 . 3 156 Response Regulator Gene Family AT3G48100 53.2 8.8e-39 157.1
Cmu07g0570 . 23 154 Response Regulator Gene Family AT3G48100 56.8 8.2e-37 150.6
Cmu05g2549 . 1 201 Response Regulator Gene Family AT1G59940 60.0 1.8e-55 213.4
Cmu06g1714 . 32 177 Response Regulator Gene Family AT1G59940 66.4 1.8e-47 186.8
Cmu01g0720 . 5 152 Response Regulator Gene Family AT1G59940 58.8 1.6e-40 163.7
Cmu05g2725 . 11 154 Response Regulator Gene Family AT1G59940 59.7 3.1e-39 159.5
Cmu10g2355 . 8 154 Response Regulator Gene Family AT1G59940 56.5 3.1e-39 159.5
Cmu04g0488 . 11 154 Response Regulator Gene Family AT1G59940 56.3 9.0e-39 157.9
Cmu07g0570 . 18 153 Response Regulator Gene Family AT1G59940 60.3 4.5e-38 155.6
Cmu05g2549 . 28 185 Response Regulator Gene Family AT1G10470 71.5 5.8e-54 208.0
Cmu06g1714 . 32 177 Response Regulator Gene Family AT1G10470 67.8 1.2e-46 183.7
Cmu10g2355 . 10 162 Response Regulator Gene Family AT1G10470 56.2 4.7e-40 161.8
Cmu01g0720 . 5 157 Response Regulator Gene Family AT1G10470 57.5 1.1e-39 160.6
Cmu04g0488 . 17 168 Response Regulator Gene Family AT1G10470 56.9 1.2e-38 157.1
Cmu05g2725 . 11 176 Response Regulator Gene Family AT1G10470 52.4 2.6e-38 156.0
Cmu07g0570 . 23 153 Response Regulator Gene Family AT1G10470 61.1 1.7e-37 153.3
Cmu06g1714 . 16 177 Response Regulator Gene Family AT3G48100 69.3 9.7e-54 206.8
Cmu05g2549 . 29 162 Response Regulator Gene Family AT3G48100 71.6 2.2e-50 195.7
Cmu01g0720 . 11 151 Response Regulator Gene Family AT3G48100 61.0 5.5e-41 164.5
Cmu04g0488 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.1e-40 162.5
Cmu05g2725 . 4 168 Response Regulator Gene Family AT3G48100 53.9 1.0e-39 160.2
Cmu10g2355 . 3 156 Response Regulator Gene Family AT3G48100 53.2 8.8e-39 157.1
Cmu07g0570 . 23 154 Response Regulator Gene Family AT3G48100 56.8 8.2e-37 150.6
Cmu06g1714 . 28 166 Response Regulator Gene Family AT5G62920 74.8 1.0e-50 196.8
Cmu05g2549 . 9 175 Response Regulator Gene Family AT5G62920 62.3 4.3e-49 191.4
Cmu01g0720 . 11 151 Response Regulator Gene Family AT5G62920 61.0 1.6e-40 162.9
Cmu04g0488 . 12 156 Response Regulator Gene Family AT5G62920 57.2 1.1e-39 160.2
Cmu10g2355 . 10 156 Response Regulator Gene Family AT5G62920 55.8 3.1e-39 158.7
Cmu05g2725 . 11 171 Response Regulator Gene Family AT5G62920 52.5 9.8e-38 153.7
Cmu06g1714 . 29 182 Response Regulator Gene Family AT1G19050 71.3 4.6e-52 201.4
Cmu05g2549 . 23 185 Response Regulator Gene Family AT1G19050 58.5 5.4e-45 177.9
Cmu05g2725 . 8 159 Response Regulator Gene Family AT1G19050 54.6 9.8e-39 157.1
Cmu10g2355 . 5 156 Response Regulator Gene Family AT1G19050 53.3 1.7e-38 156.4
Cmu04g0488 . 11 156 Response Regulator Gene Family AT1G19050 54.8 2.9e-38 155.6
Cmu01g0720 . 7 154 Response Regulator Gene Family AT1G19050 54.1 1.1e-37 153.7
Cmu07g0570 . 23 154 Response Regulator Gene Family AT1G19050 60.6 1.9e-37 152.9
Cmu04g0488 . 8 264 Response Regulator Gene Family AT2G41310 54.1 1.1e-59 226.9
Cmu10g2355 . 1 157 Response Regulator Gene Family AT2G41310 72.0 2.8e-55 212.2
Cmu01g0720 . 1 153 Response Regulator Gene Family AT2G41310 64.3 8.8e-49 190.7
Cmu08g0531 . 7 158 Response Regulator Gene Family AT2G41310 59.1 9.4e-43 170.6
Cmu05g2549 . 25 158 Response Regulator Gene Family AT2G41310 59.2 1.0e-41 167.2
Cmu06g1714 . 31 162 Response Regulator Gene Family AT2G41310 61.9 3.0e-41 165.6
Cmu07g0570 . 17 154 Response Regulator Gene Family AT2G41310 55.6 5.7e-40 161.4
Cmu04g0488 . 8 264 Response Regulator Gene Family AT3G57040 53.1 2.9e-63 238.8
Cmu10g2355 . 1 157 Response Regulator Gene Family AT3G57040 74.5 1.6e-56 216.5
Cmu01g0720 . 8 153 Response Regulator Gene Family AT3G57040 67.1 3.7e-50 195.3
Cmu05g2725 . 4 158 Response Regulator Gene Family AT3G57040 65.0 3.1e-49 192.2
Cmu05g2549 . 25 158 Response Regulator Gene Family AT3G57040 59.4 2.0e-43 172.9
Cmu08g0531 . 11 174 Response Regulator Gene Family AT3G57040 56.4 2.0e-43 172.9
Cmu06g1714 . 28 171 Response Regulator Gene Family AT3G57040 58.2 1.8e-41 166.4
Cmu07g0570 . 20 154 Response Regulator Gene Family AT3G57040 56.7 3.8e-39 158.7
Cmu06g1714 . 26 182 Response Regulator Gene Family AT1G74890 70.8 5.4e-53 204.5
Cmu05g2549 . 25 187 Response Regulator Gene Family AT1G74890 61.2 4.4e-47 184.9
Cmu05g2725 . 5 159 Response Regulator Gene Family AT1G74890 56.8 6.8e-40 161.0
Cmu04g0488 . 12 172 Response Regulator Gene Family AT1G74890 52.1 2.6e-39 159.1
Cmu01g0720 . 11 146 Response Regulator Gene Family AT1G74890 60.3 5.8e-39 157.9
Cmu10g2355 . 8 154 Response Regulator Gene Family AT1G74890 55.1 9.8e-39 157.1
Cmu07g0570 . 23 150 Response Regulator Gene Family AT1G74890 60.2 5.4e-37 151.4
Cmu07g0570 . 23 155 Response Regulator Gene Family AT2G40670 70.1 2.1e-47 185.7
Cmu05g2549 . 26 159 Response Regulator Gene Family AT2G40670 56.9 3.2e-40 161.8
Cmu10g2355 . 6 156 Response Regulator Gene Family AT2G40670 55.3 3.2e-40 161.8
Cmu06g1714 . 32 163 Response Regulator Gene Family AT2G40670 60.0 3.0e-38 155.2
Cmu04g0488 . 13 156 Response Regulator Gene Family AT2G40670 51.7 7.4e-37 150.6
Cmu07g0570 . 5 155 Response Regulator Gene Family AT3G56380 66.4 6.6e-48 187.2
Cmu05g2549 . 23 159 Response Regulator Gene Family AT3G56380 52.9 3.0e-40 161.8
Cmu06g1714 . 18 163 Response Regulator Gene Family AT3G56380 57.8 5.1e-40 161.0
Cmu10g2355 . 6 156 Response Regulator Gene Family AT3G56380 53.3 4.3e-39 157.9
Cmu01g0720 . 11 154 Response Regulator Gene Family AT3G56380 54.5 1.8e-37 152.5
Cmu05g2725 . 3 149 Response Regulator Gene Family AT3G56380 55.4 5.3e-37 151.0
Cmu08g1681 . 336 540 Response Regulator Gene Family AT3G16857 53.8 2.3e-54 210.7
Cmu06g0463 . 79 304 Response Regulator Gene Family AT4G16110 66.7 2.2e-79 293.9
Cmu05g0703 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.7e-79 293.1
Cmu05g1682 . 12 233 Response Regulator Gene Family AT4G16110 60.2 2.0e-61 234.2
Cmu08g1681 . 294 519 Response Regulator Gene Family AT4G16110 54.5 9.4e-59 225.3
Cmu06g1276 . 17 249 Response Regulator Gene Family AT4G16110 53.8 8.8e-57 218.8
Cmu11g0338 . 416 664 Response Regulator Gene Family AT4G16110 51.7 2.3e-52 204.1
Cmu11g0338 . 411 738 Response Regulator Gene Family AT4G31920 51.2 6.2e-80 295.4
Cmu06g0463 . 78 333 Response Regulator Gene Family AT4G31920 55.5 1.1e-71 268.1
Cmu05g0703 . 16 271 Response Regulator Gene Family AT4G31920 54.1 9.9e-70 261.5
Cmu08g1681 . 295 543 Response Regulator Gene Family AT4G31920 50.4 4.5e-62 236.1
Cmu05g0703 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.7e-40 164.1
Cmu05g1682 . 93 255 Response Regulator Gene Family AT1G67710 53.8 3.0e-40 163.3
Cmu06g1276 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.2e-102 368.6
Cmu11g0338 . 413 757 Response Regulator Gene Family AT2G25180 55.2 6.9e-85 312.0
Cmu05g0703 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cmu08g1681 . 295 540 Response Regulator Gene Family AT2G25180 55.6 9.0e-69 258.5
Cmu06g0463 . 141 374 Response Regulator Gene Family AT2G01760 51.4 7.5e-54 208.0
Cmu06g1276 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.2e-49 191.4
Cmu08g1681 . 356 543 Response Regulator Gene Family AT2G01760 51.0 3.6e-48 189.1
Cmu08g1681 . 293 542 Response Regulator Gene Family AT5G58080 50.6 6.7e-62 235.7
Cmu04g1247 . 21 566 Response Regulator Gene Family AT5G61380 50.8 9.2e-141 497.7
Cmu04g0906 . 38 205 Response Regulator Gene Family AT5G60100 68.0 5.6e-54 208.8
Cmu01g0009 . 55 192 Response Regulator Gene Family AT5G60100 61.6 2.2e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000219 2 6 2 4 4 5 9 5 5 3 5 5 8 5 5 8 5 6 7 5 5 5 6 6 6 5 4 13 7 2 163
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7021 PF00072 Response_reg 1.80E-13 CL0304 Cmu TR