Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2355 ATGGTTATGGCTACCGATTCCCAATTCCATGTTCTTGCCGTCGATGATAGCCTCATAGATAGAAAACTCATCGAAAGGCTTCTCAAAACCTCCTCCTATCAAGTTACTACGGTTGATTCTGGTAGCAAGGCCTTGGAATTTCTTGGTCTGATTCAAGAACATCAACATACAAACTTCAAATCCCCTTCTCCTTCTCCTTCTTTTTCCTCCTCCAACAATCATCACCAGGAAGTGGAAGTGAATCTTATCATCACTGATTACTGTATGCCTGGAATGACTGGCTTCGATTTGCTCAAGAAAGTTAAGGAATCATCGTCGCTTAGAAACATACCAGTGGTGATAATGTCATCGGAAAACGTACCTTCGAGAATCAGCAGATGTTTGGAAGAAGGCGCGGAAGAGTTCTTCCTGAAGCCAGTTCGATTGTGCGATGTGAATAAACTGAAACCGCATATGATGAAGACGAAGTTGATGGAGGATCAAAATCAAGAAGAAGAAGAAACAACAGCAACAGAGATCGAATTGGAATCGGTAGAAAAAGAAGAAGAAGAGGAAGAGTTTGAGTTTGAGATGAGTAAGAAGAGAAAGGGAGGTGTGGATGAAGAAAGTGTGGAGACGGAGAGAAGAAGAAGAAGGTTCGACAACAATGGCGTCGCGACGGTGATTTGA 669 42.6 MVMATDSQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLIQEHQHTNFKSPSPSPSFSSSNNHHQEVEVNLIITDYCMPGMTGFDLLKKVKESSSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLCDVNKLKPHMMKTKLMEDQNQEEEETTATEIELESVEKEEEEEEFEFEMSKKRKGGVDEESVETERRRRRFDNNGVATVI 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29898023 29899281 - CmPI595203_10g023550.1 Cmu10g2355 427885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2355 222 MobiDBLite consensus disorder prediction 187 215 - -
Cmu10g2355 222 MobiDBLite consensus disorder prediction 158 222 - -
Cmu10g2355 222 Gene3D - 10 216 - -
Cmu10g2355 222 CDD REC_typeA_ARR 11 148 - -
Cmu10g2355 222 Pfam Response regulator receiver domain 74 142 IPR001789 GO:0000160(InterPro)
Cmu10g2355 222 Coils Coil 161 181 - -
Cmu10g2355 222 SUPERFAMILY CheY-like 8 166 IPR011006 -
Cmu10g2355 222 SMART REC_2 9 148 IPR001789 GO:0000160(InterPro)
Cmu10g2355 222 MobiDBLite consensus disorder prediction 164 186 - -
Cmu10g2355 222 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 196 IPR045279 GO:0009736(InterPro)
Cmu10g2355 222 ProSiteProfiles Response regulatory domain profile. 10 153 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0488 Cmu-Chr4:16934590 Cmu10g2355 Cmu-Chr10:29898023 1.20E-54 dispersed
Cmu05g2725 Cmu-Chr5:35717799 Cmu10g2355 Cmu-Chr10:29898023 1.00E-50 dispersed
Cmu06g1714 Cmu-Chr6:28166954 Cmu10g2355 Cmu-Chr10:29898023 1.10E-38 dispersed
Cmu07g0570 Cmu-Chr7:7031110 Cmu10g2355 Cmu-Chr10:29898023 1.80E-40 dispersed
Cmu08g0531 Cmu-Chr8:17251012 Cmu10g2355 Cmu-Chr10:29898023 1.70E-39 dispersed
Cmu10g2355 Cmu-Chr10:29898023 Cmu05g2549 Cmu-Chr5:34264382 1.90E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7021 PF00072 Response_reg 1.80E-13 CL0304 Cmu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2355 K14492 - csv:101220810 308.531