Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2370 ATGAGGAAAGAGGGAGGGTTTATGAAGAAAATGGGAAAGTCAATATGGTTCAAAGTTTTGGTGGGCTTTTTTGGTTTTGAGCTCATCGATGAGTTGGAAGCTGGGGAGTTGATAGCTGAAGTTTTGATAACAGTGAAGATTGGTGCAGACGATTTAAAAAAAACGGTGAACGGGATGCCTAGCTTCGTTTCTTCGATGCCCACAGCCAATAATTCCATGGGTGCAGAGGGGAGCTCTATTCCTTCATCTCGGATTTCAGACTTTAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCCAGTAGTTCGACTCTGAACAACATCCAATTTGGTTCTTTAATTAAGCCACTTGCATCCACTGATGTAAATCTGCCAACTGCTGTCATGGGGTCTCGAACACTGCCATTACAGAAGGAGTCAAATCCAAATTTGGTTTCTACTTCTGGTGGTCCTCGTGAAAATTGGGGAGAGTCTAATATGGCAGATACCAGCACAAGAACTGATACCTCCACAGATGACACGGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGCCGCATATGATTCTAGCAACAAATCAAAAGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTTGCTCAAAATCGCGAAGCTGCTAGAAAAAGCCGTTTAAGGAAAAAAGCATATGTGCAGCAGCTAGAAAGTAGCAGACTGAAGCTTACTCAACTTGAGCAAGAACTCCAGCGGGCCCGCCAGCAGGGTATATTTATTTCAAATTCTGGAGACCAAGCTCATTCAATGAGTGGGAATGGGGCCCTAGCATTCGATGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATGAATGAGCTTAGAGCTGCAGTAAATTCACATGCTGGTGACACTGAACTTCGTACTATTGTAGATAATGTGACTACACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGGCTTTAGATGTAATAAGCCTTGGTAAAAAATCAAGCTCTCTCTACCGACCTGTTGTTTTATTACTTGTCTATTTAATTATAGACCTTTCAATGTCATTTTCAACCATTATGGGTTACGAAGTGGTCGTCTATTCAGATGCTTTTAAGTTAGAGTTACCTTCTCGTAATGCCCGCCTACTTTTGCCACCTTTGAGCTCCACTCAGTCCTCCTCAGATGGTGACACCTCTGACTGTTCTTTCAAATTTTGGAAAGGCAGCAGGAAAGATTCTGAGTTTTCCATGGAACAGCTTCTTGTAAACCAATTAGAGCCTTTGGCTGAGCAGCAGCTAATGGGCATTTGCAACCTGCAACAATTATCACAACAGGCAGAGGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACATTGGCCAGTGCCACACCTGCAACGTCGGGATCGTCTGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGACAGGCTGATAATCTTCGTCAACAAACCCTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGTGCACTTCTTGCAATAAACGACTACTTCTCCCGTCTTAGAGCCCTCAGTTCTCTGTGGCTTGCACGGCCACGAGATTGA 1809 43.73 MRKEGGFMKKMGKSIWFKVLVGFFGFELIDELEAGELIAEVLITVKIGADDLKKTVNGMPSFVSSMPTANNSMGAEGSSIPSSRISDFRTLEQTLGFHIEDVDLTRNPLYNQIKSSSSTLNNIQFGSLIKPLASTDVNLPTAVMGSRTLPLQKESNPNLVSTSGGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAAYDSSNKSKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGALAFDVEYSRWLEEHNRLMNELRAAVNSHAGDTELRTIVDNVTTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKALDVISLGKKSSSLYRPVVLLLVYLIIDLSMSFSTIMGYEVVVYSDAFKLELPSRNARLLLPPLSSTQSSSDGDTSDCSFKFWKGSRKDSEFSMEQLLVNQLEPLAEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASATPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRD 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30140364 30148774 + CmPI595203_10g023700.1 Cmu10g2370 427900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2370 602 SUPERFAMILY Leucine zipper domain 221 264 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2370 602 Gene3D - 220 272 - -
Cmu10g2370 602 Pfam Seed dormancy control 304 377 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cmu10g2370 602 SMART brlzneu 217 280 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2370 602 CDD bZIP_HBP1b-like 221 272 - -
Cmu10g2370 602 ProSiteProfiles DOG1 domain profile. 286 599 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cmu10g2370 602 MobiDBLite consensus disorder prediction 183 198 - -
Cmu10g2370 602 Pfam bZIP transcription factor 220 261 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2370 602 Coils Coil 240 267 - -
Cmu10g2370 602 MobiDBLite consensus disorder prediction 148 222 - -
Cmu10g2370 602 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 219 263 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2370 602 PANTHER TRANSCRIPTION FACTOR TGA9 179 377 - -
Cmu10g2370 602 FunFam BZIP family transcription factor 220 269 - -
Cmu10g2370 602 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 224 239 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2370 602 MobiDBLite consensus disorder prediction 148 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1013 Cmu-Chr8:22364478 Cmu10g2370 Cmu-Chr10:30140364 9.20E-122 dispersed
Cmu10g2370 Cmu-Chr10:30140364 Cmu10g2471 Cmu-Chr10:31315563 3.20E-74 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7022 PF14144 DOG1 1.10E-28 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2370 K14431 - csv:101219149 610.527