Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2373 ATGTGGGCTCTTCGTAGAGCTTCTACTCCTCTTAGGAATCGAGGGTACAGAGTAAGAACTTCATATGTCTTTGGCAAACTAGAGGTACCATATTCTTGGGAAGGAAATGTAGCTGGTTTTGGAACCACCGCGGCTTTATCTGATAGATGCATTTTTTTTGAGGGAAACAACCTTGCAACATGGCCATCCTCTTGTATTTATATTAGTAGTCATGGTCTATCTTCACAAGCTGGTGCTGAGAACAGTGGAGAGGAAGATAAAATGGAAGATGGATTTTCTGAACTTGATGAAACACTTCCAAGCACTAGTCCACTCGAAGATAGTAAGGCAGCTGATAATAATGAAGAGGAACTAACCTGTGGATCAGAAATTGATGATGACGACGACGACATTGATGATGGGACACAAAATGAACTGGATTTACCTGAGGTAGAAACTGAACTTGCTGAAAAGATATCAACAAAAAGGGCTTCTTCAGAGCTGTTCCATGCTATTAATGGTGCTCCAGGTTTATCTGTTCCTATTGTACTTGATAAGTGGGTCAGTGAAGGAAAAGAAATAAGCCGGGCTGTTGTCTCTCTTGCCATGCTCAATCTTCGTAAACGTCGAATGTTTGGGAAGGCTTTGCAGTTTTCGGAGTGGTTGGAAGCAAGCGGGCAACTCGATTCTATTGAGAGAGATTATGCTTCTCGCCTTGACTTGATTGCAAAGGTACACGGTCTCCATAAGGCAGAGAGGTACATTGCTAAAATCCCAAAGTCCTTCCAGGGGGAGGTGATATACCGAACTCTTTTGGCTAACTGTGTGATAGCCAACAATGTAAAAAAAGCAGAGGAAGTATTTAACAAAATGAAGGACCTCGGATTCCCACTCACAACATTTGCTTGCAACCAGTTGCTTCTTCTTCACAAGAGGCATGACAAGAGGAAAATGGCCGACGATTTGTTGTTGATGGAGAAAGAAAATATCAAGCCTTCTCTATTTACTTACAAAATCTTAATAGATGCTAAAGGCTTATCAAATGACATGCTAGGGATGGAACAAGTTGTTGATACAATGAAGGCCGAAGGAGTTGAAATTGATGTCAATGTACTTTCCATATTAGCTAAGCACTATGCTTCAGGTGGGCTTAAAGACAAAGCCAAGGCCATTTTAAAGGAGATGGAAGATGTTAACTCCAAAGGTTCTCAATGGCCTTGCAGAATATTACTTCCCCTTTATGGAGAACTCCAAATGGAAGATGACGTGAGGAGGCTCTGGAAGATCTGCGAGCCAAATCCTCGTATCGAAGAATGCATGGCTGCCATTGTTGCTTGGGGAAAGTTGAAGAACGTCCCGGAAGCAGAGAAAATTTTTGATAGAGTTGTAAAAACATGGAAGAAGCTGTCCCCAAAACAATATTCTACCATGTTGAACGTTTATGCAGATAATAAGATGCTGACGAAGGGCAAGGATCTAGTCAAGCAGATGGCAGACAGCGGTTGCAGCATCGGTCCGTTATCATGGGATGCAATTGTGAAGCTCTATGTGGAAGCTGGGGAGGTAGAAAAAGCAGACTCTTTCTTGGTTAAGGCTGTTCAAAAAAGCCAGAAGAAGCCATTGTTTACCTCATACATGGTTATCATGGATCACTATGCAAGAAGGGGGGATGTCCACAATGCAGAGAAAATCTTTCACAATATGAGACTGTGGGGTTACGTGGCTCGATTGAGGCAATTTCAAACTCTAATACAGGCATACGTTAACGCGAAGACTCCGGCCTATGGTATGAGAGAGAGAATGAAGGCAGATAATGTATTTCCAAACAAAGCTTTGGCAGGAAAATTAGCCCAAGTTGATGCTTTAAGGAAGACAGCAGTGTCGGATTTGCTTGACTGA 1878 42.39 MWALRRASTPLRNRGYRVRTSYVFGKLEVPYSWEGNVAGFGTTAALSDRCIFFEGNNLATWPSSCIYISSHGLSSQAGAENSGEEDKMEDGFSELDETLPSTSPLEDSKAADNNEEELTCGSEIDDDDDDIDDGTQNELDLPEVETELAEKISTKRASSELFHAINGAPGLSVPIVLDKWVSEGKEISRAVVSLAMLNLRKRRMFGKALQFSEWLEASGQLDSIERDYASRLDLIAKVHGLHKAERYIAKIPKSFQGEVIYRTLLANCVIANNVKKAEEVFNKMKDLGFPLTTFACNQLLLLHKRHDKRKMADDLLLMEKENIKPSLFTYKILIDAKGLSNDMLGMEQVVDTMKAEGVEIDVNVLSILAKHYASGGLKDKAKAILKEMEDVNSKGSQWPCRILLPLYGELQMEDDVRRLWKICEPNPRIEECMAAIVAWGKLKNVPEAEKIFDRVVKTWKKLSPKQYSTMLNVYADNKMLTKGKDLVKQMADSGCSIGPLSWDAIVKLYVEAGEVEKADSFLVKAVQKSQKKPLFTSYMVIMDHYARRGDVHNAEKIFHNMRLWGYVARLRQFQTLIQAYVNAKTPAYGMRERMKADNVFPNKALAGKLAQVDALRKTAVSDLLD 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30161569 30164830 - CmPI595203_10g023730.1 Cmu10g2373 427903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2373 625 Pfam Pentatricopeptide repeat domain 283 336 IPR002885 -
Cmu10g2373 625 PANTHER OS12G0527900 PROTEIN 72 613 - GO:0005739(PANTHER)
Cmu10g2373 625 NCBIfam pentatricopeptide repeat 259 292 IPR002885 -
Cmu10g2373 625 NCBIfam pentatricopeptide repeat 467 497 IPR002885 -
Cmu10g2373 625 NCBIfam pentatricopeptide repeat 537 567 IPR002885 -
Cmu10g2373 625 Pfam PPR repeat 537 565 IPR002885 -
Cmu10g2373 625 Pfam PPR repeat 467 495 IPR002885 -
Cmu10g2373 625 MobiDBLite consensus disorder prediction 118 140 - -
Cmu10g2373 625 MobiDBLite consensus disorder prediction 76 140 - -
Cmu10g2373 625 Gene3D Tetratricopeptide repeat domain 314 422 IPR011990 GO:0005515(InterPro)
Cmu10g2373 625 Gene3D Tetratricopeptide repeat domain 174 313 IPR011990 GO:0005515(InterPro)
Cmu10g2373 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Cmu10g2373 625 Gene3D Tetratricopeptide repeat domain 430 621 IPR011990 GO:0005515(InterPro)
Cmu10g2373 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Cmu10g2373 625 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 432 619 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g2371 Cmu-Chr10:30150363 Cmu10g2373 Cmu-Chr10:30161569 1.2e-313 dispersed
Cmu10g2372 Cmu-Chr10:30156169 Cmu10g2373 Cmu-Chr10:30161569 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2373 - - - 0.0