Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu10g2378 | ATGGGTTTGGAAATTGTGGATCCAAACACTTGCATCAGGGGCTGCTGCTCCAGCAAATCGATTCCTCTTCATCTTCAACCTTCCGCATTTACGTTGCTCTCCCCAATTGCCCGAGGGGCCGAGAGTATTGTGTATGAAGGAAGGTTGGATGGTAAAAAAGTTGCTGTAAAGAAGCCCACCTTGTCTACTTCTGAGGAATTGGACAAGTTTCATATGGAGCTCCAGTTGCTATGTGAATTAGATCATCCAGGCATAGTAAAACTGGTTGCAGCAAATGCGAAGCCACCTAACTACATGTTTTTCTTTGAATTCTACGAGTCTCCAAATCTTGCGGAGAAATTGCATGCCGAAGAATGGAATCCAAGTATCAATCAGGTGCTCATGATCACTATAGAGTTAGCAAAGGCTTTGCAGTATTTGCATAACTTGGGGATTGTTCATAGGGATGTGAAACCAGCAAATGTTCTTCTTGACAAAGATTTGCATCCGCACTTGGCTGATTTTGGTCTAGCAACACATCAGAAATACCTGAAAGAAATTTCTGCTGAAAATTGGAAGTCATCTGGCAAGCCAACAGGTGGTTTCTATAAGAAAAACATGGCCCACACTGTATTGGAAATGAATTATACAGAGCAGCTGCTTACGGCAGCTATTGTTTCAGATGGCTTGCGGCCAGCTCTTCCTACTGATGAGTCTGGCACACCATCTAGGTTGTTATCACTTATACGGAGGTGCTGGGATGCAAATCCTAGAAATAGACCATCTTTTTCTGATATAGTTATGGACTTGGAATCAATTTGGGAGAATAGAAGGGGTCTAGAATCTGTCACCCCTATACAACCTGACTTGTGTGGTAGGCTTAGTGATGCTAATGAACATGATTACGTGTATCGAGAAGATATTAACTGGTCAAATCAGGGAGAACATTGTTCTCAAAAATTATCTGATGCAGATAGGTGTGCTTTGAATGAGTGGTTTGATTTCTCAACTGACCATTCAGCATACCGCCCAACACTTACTTACGGATCCTTCTCCACCTGTGGGAGGAGGGAGACCATGGAGGACTCTCATTTCCTTTTGCGTCACTTCTGCAGTGAAGAGGACATCCATGTCTTTGGGATCTTTGATGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTCAAGCAATTCCTGGATTCTTGCGAACATCATTTTCCACAAGAAGTCCTGCAGATGCATTAACGGAAGCATTTGTAAAAACAGACATTGAGTTTAGAAAAGAACTCGAGTTCTTTCGCAAATCCAAGAAAGTTAAACAGAAAGATTGGCATCCTGGTTGCACTGCTGTTGTTGCTCTAGTTGTTAGAGACAGGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACAATATTGTGTCGGGCTGGGAATCCCATTGTTTTAAGTAAGGATCATGTCGCTAGTTGTCTTGAGGAGAGAGAGCGTGTCATCAGTGCCGGAGGACAGGTCAAGTGGCAAGTTGATACATGGAGGGTTGGACCGGCTGCTCTTCAGGTCACTCGATCAATTGGCGACGATGATCTGAAGCCAGCCGTCACTGCAGAACCCGAGATAACGGAAACTGTTTTGACATCACAGGATGATTACCTGGTTATGGCTAGTGATGGATTGTGGGATGTCCTTAGCAACTCTGAGGTAGTTGGTATAATCAGGGACACTGTCAAAGATCCGGGAATGTGCTCGAAGCGACTTGCGACAGAAGCGGCAGCTCGGGGAAGCAACGATAACATCACGGTAGTTGTTGTATTTTTACATCCAGTATCTACAGTAGAGAGAATATATTAA | 1824 | 44.08 | MGLEIVDPNTCIRGCCSSKSIPLHLQPSAFTLLSPIARGAESIVYEGRLDGKKVAVKKPTLSTSEELDKFHMELQLLCELDHPGIVKLVAANAKPPNYMFFFEFYESPNLAEKLHAEEWNPSINQVLMITIELAKALQYLHNLGIVHRDVKPANVLLDKDLHPHLADFGLATHQKYLKEISAENWKSSGKPTGGFYKKNMAHTVLEMNYTEQLLTAAIVSDGLRPALPTDESGTPSRLLSLIRRCWDANPRNRPSFSDIVMDLESIWENRRGLESVTPIQPDLCGRLSDANEHDYVYREDINWSNQGEHCSQKLSDADRCALNEWFDFSTDHSAYRPTLTYGSFSTCGRRETMEDSHFLLRHFCSEEDIHVFGIFDGHRGAAAAEFSAQAIPGFLRTSFSTRSPADALTEAFVKTDIEFRKELEFFRKSKKVKQKDWHPGCTAVVALVVRDRLFVANAGDCRTILCRAGNPIVLSKDHVASCLEERERVISAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEITETVLTSQDDYLVMASDGLWDVLSNSEVVGIIRDTVKDPGMCSKRLATEAAARGSNDNITVVVVFLHPVSTVERIY | 607 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 30200097 | 30211019 | - | CmPI595203_10g023780.1 | Cmu10g2378 | 427908 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu10g2378 | 607 | Gene3D | - | 330 | 602 | IPR036457 | - | |
Cmu10g2378 | 607 | SUPERFAMILY | PP2C-like | 332 | 599 | IPR036457 | - | |
Cmu10g2378 | 607 | FunFam | Leucine rich repeat protein phosphatase 2c domain containing protein | 331 | 601 | - | - | |
Cmu10g2378 | 607 | Pfam | Protein kinase domain | 33 | 177 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu10g2378 | 607 | ProSiteProfiles | Protein kinase domain profile. | 30 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu10g2378 | 607 | SUPERFAMILY | Protein kinase-like (PK-like) | 24 | 282 | IPR011009 | - | |
Cmu10g2378 | 607 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 145 | 157 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu10g2378 | 607 | SMART | PP2C_SIG_2 | 355 | 597 | IPR001932 | - | |
Cmu10g2378 | 607 | Pfam | Protein phosphatase 2C | 341 | 590 | IPR001932 | - | |
Cmu10g2378 | 607 | SMART | serkin_6 | 30 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu10g2378 | 607 | CDD | PP2Cc | 341 | 597 | IPR001932 | - | |
Cmu10g2378 | 607 | ProSiteProfiles | PPM-type phosphatase domain profile. | 340 | 597 | IPR001932 | - | |
Cmu10g2378 | 607 | PANTHER | PROTEIN PHOSPHATASE | 308 | 596 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Cmu10g2378 | 607 | Gene3D | Transferase(Phosphotransferase) domain 1 | 17 | 280 | - | - | |
Cmu10g2378 | 607 | SMART | PP2C_4 | 330 | 595 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu10g2378 | Cmu-Chr10:30200097 | Cmu11g0873 | Cmu-Chr11:11452378 | 1.30E-25 | dispersed | |
Cmu10g2378 | Cmu-Chr10:30200097 | Cmu03g0687 | Cmu-Chr3:1053201 | 1.30E-30 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75862 | PF00481 | PP2C | 1.90E-67 | CL0238 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu10g2378 | - | - | - | 0.0 |