Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2378 ATGGGTTTGGAAATTGTGGATCCAAACACTTGCATCAGGGGCTGCTGCTCCAGCAAATCGATTCCTCTTCATCTTCAACCTTCCGCATTTACGTTGCTCTCCCCAATTGCCCGAGGGGCCGAGAGTATTGTGTATGAAGGAAGGTTGGATGGTAAAAAAGTTGCTGTAAAGAAGCCCACCTTGTCTACTTCTGAGGAATTGGACAAGTTTCATATGGAGCTCCAGTTGCTATGTGAATTAGATCATCCAGGCATAGTAAAACTGGTTGCAGCAAATGCGAAGCCACCTAACTACATGTTTTTCTTTGAATTCTACGAGTCTCCAAATCTTGCGGAGAAATTGCATGCCGAAGAATGGAATCCAAGTATCAATCAGGTGCTCATGATCACTATAGAGTTAGCAAAGGCTTTGCAGTATTTGCATAACTTGGGGATTGTTCATAGGGATGTGAAACCAGCAAATGTTCTTCTTGACAAAGATTTGCATCCGCACTTGGCTGATTTTGGTCTAGCAACACATCAGAAATACCTGAAAGAAATTTCTGCTGAAAATTGGAAGTCATCTGGCAAGCCAACAGGTGGTTTCTATAAGAAAAACATGGCCCACACTGTATTGGAAATGAATTATACAGAGCAGCTGCTTACGGCAGCTATTGTTTCAGATGGCTTGCGGCCAGCTCTTCCTACTGATGAGTCTGGCACACCATCTAGGTTGTTATCACTTATACGGAGGTGCTGGGATGCAAATCCTAGAAATAGACCATCTTTTTCTGATATAGTTATGGACTTGGAATCAATTTGGGAGAATAGAAGGGGTCTAGAATCTGTCACCCCTATACAACCTGACTTGTGTGGTAGGCTTAGTGATGCTAATGAACATGATTACGTGTATCGAGAAGATATTAACTGGTCAAATCAGGGAGAACATTGTTCTCAAAAATTATCTGATGCAGATAGGTGTGCTTTGAATGAGTGGTTTGATTTCTCAACTGACCATTCAGCATACCGCCCAACACTTACTTACGGATCCTTCTCCACCTGTGGGAGGAGGGAGACCATGGAGGACTCTCATTTCCTTTTGCGTCACTTCTGCAGTGAAGAGGACATCCATGTCTTTGGGATCTTTGATGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTCAAGCAATTCCTGGATTCTTGCGAACATCATTTTCCACAAGAAGTCCTGCAGATGCATTAACGGAAGCATTTGTAAAAACAGACATTGAGTTTAGAAAAGAACTCGAGTTCTTTCGCAAATCCAAGAAAGTTAAACAGAAAGATTGGCATCCTGGTTGCACTGCTGTTGTTGCTCTAGTTGTTAGAGACAGGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACAATATTGTGTCGGGCTGGGAATCCCATTGTTTTAAGTAAGGATCATGTCGCTAGTTGTCTTGAGGAGAGAGAGCGTGTCATCAGTGCCGGAGGACAGGTCAAGTGGCAAGTTGATACATGGAGGGTTGGACCGGCTGCTCTTCAGGTCACTCGATCAATTGGCGACGATGATCTGAAGCCAGCCGTCACTGCAGAACCCGAGATAACGGAAACTGTTTTGACATCACAGGATGATTACCTGGTTATGGCTAGTGATGGATTGTGGGATGTCCTTAGCAACTCTGAGGTAGTTGGTATAATCAGGGACACTGTCAAAGATCCGGGAATGTGCTCGAAGCGACTTGCGACAGAAGCGGCAGCTCGGGGAAGCAACGATAACATCACGGTAGTTGTTGTATTTTTACATCCAGTATCTACAGTAGAGAGAATATATTAA 1824 44.08 MGLEIVDPNTCIRGCCSSKSIPLHLQPSAFTLLSPIARGAESIVYEGRLDGKKVAVKKPTLSTSEELDKFHMELQLLCELDHPGIVKLVAANAKPPNYMFFFEFYESPNLAEKLHAEEWNPSINQVLMITIELAKALQYLHNLGIVHRDVKPANVLLDKDLHPHLADFGLATHQKYLKEISAENWKSSGKPTGGFYKKNMAHTVLEMNYTEQLLTAAIVSDGLRPALPTDESGTPSRLLSLIRRCWDANPRNRPSFSDIVMDLESIWENRRGLESVTPIQPDLCGRLSDANEHDYVYREDINWSNQGEHCSQKLSDADRCALNEWFDFSTDHSAYRPTLTYGSFSTCGRRETMEDSHFLLRHFCSEEDIHVFGIFDGHRGAAAAEFSAQAIPGFLRTSFSTRSPADALTEAFVKTDIEFRKELEFFRKSKKVKQKDWHPGCTAVVALVVRDRLFVANAGDCRTILCRAGNPIVLSKDHVASCLEERERVISAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEITETVLTSQDDYLVMASDGLWDVLSNSEVVGIIRDTVKDPGMCSKRLATEAAARGSNDNITVVVVFLHPVSTVERIY 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30200097 30211019 - CmPI595203_10g023780.1 Cmu10g2378 427908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2378 607 Gene3D - 330 602 IPR036457 -
Cmu10g2378 607 SUPERFAMILY PP2C-like 332 599 IPR036457 -
Cmu10g2378 607 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 331 601 - -
Cmu10g2378 607 Pfam Protein kinase domain 33 177 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2378 607 ProSiteProfiles Protein kinase domain profile. 30 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2378 607 SUPERFAMILY Protein kinase-like (PK-like) 24 282 IPR011009 -
Cmu10g2378 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2378 607 SMART PP2C_SIG_2 355 597 IPR001932 -
Cmu10g2378 607 Pfam Protein phosphatase 2C 341 590 IPR001932 -
Cmu10g2378 607 SMART serkin_6 30 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2378 607 CDD PP2Cc 341 597 IPR001932 -
Cmu10g2378 607 ProSiteProfiles PPM-type phosphatase domain profile. 340 597 IPR001932 -
Cmu10g2378 607 PANTHER PROTEIN PHOSPHATASE 308 596 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cmu10g2378 607 Gene3D Transferase(Phosphotransferase) domain 1 17 280 - -
Cmu10g2378 607 SMART PP2C_4 330 595 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g2378 Cmu-Chr10:30200097 Cmu11g0873 Cmu-Chr11:11452378 1.30E-25 dispersed
Cmu10g2378 Cmu-Chr10:30200097 Cmu03g0687 Cmu-Chr3:1053201 1.30E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75862 PF00481 PP2C 1.90E-67 CL0238 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2378 - - - 0.0