Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu10g2379 | ATGTCATTCCTTTCAACAAAAAGTGTTTCCAAGTTTCTTGGAAAAGTTTCTGCCCTTTGCTTGATTGCATTAATGCCAAATCTGCTTATGGACATTGGATTAGTTGCAGTTGTATGGAAAAGTTTCTGCCCTCTGCTTGATTGCAATAATGCCAAATCTGCTGATGGACATCGGATTAGTTGCAGTTGTATGGGAACCCTGAGTCAAGGAACAGTCAAGTTTGTTTTCATTTTGAAGAGGAGGGACATTCCATGGGAGACATACATGACTACTAAACTTATCAGTGGAACAAGCCTTCAGCTGTTAAGGCGATATGATAACAGACCAGAGAGTTACAGGGCACAGTTGTTGGATGATGATGGTCCAGCATATGTTCGGGTATTTGTTAGCATTTTACGCGATATATTTAAGGAAGAAACAGTGGAATATGTTCTAGCATTAATCGATGAAATGCTTACAGCAAACCCAAAAAGAGCAAGATTGTTCCACGATCCTTCTCTTGCAAGCGAAGATGCTTATGAACCTTTCCTAAGATTGCTTTGGAAGGGAAATTGGTTCATACAGGAGAAGAGCTGTAAAATACTTGCTCTGATAGTGAGTGCTAGACAGAAAACTCATGATGGAAATTTTGCAAATGATGATGCCTTGAACTCCAAGAGCAAAATTACTACCATTGATGATGTTTTGGATGGACTGGTGAAATGGCTTTGTGCACAGCTGAAGAATCCTTCACATCCTAGTCGTGCTGTACAGACTTCTATCAATTGCCTTGCAACTCTGTTGAAAGAACCAAAGGTCAGATCCTCCTTCGTCCAGACAGATGGAGTGAAATTGCTTATTCCTTTGATTTCTCCTGCATCGACCCAACAATCTATTCAGCTTCTATATGAAACTTGTCTTTGTGTTTGGCTCTTATCATATTATGAGCCGGCAATTGAATTCTTGGCCACTTCTAGGACCCTTCCAAGACTCATCGATGTTGTCAAGAGTTCCACAAAAGAGAAGGTTGTCCGAGTTATTATTTTGACCTTGAGGAACTTACTCTACAAGGGGACATTTGGAGCTCAAATGGTGGGTCTTGGACTACCACAAGTTGTTCAAAGTTTGAAATCACAAGCCTGGAGTGATGAGGACCTTTTGGAGGCTTTGAATCAACTAGAAGAGGGGCTGAAAGAAAACATCAAGAAACTAAGTTCTTTCGACAAGTATAAGCAAGAAGTCCTTCTCGGGCATCTTGACTGGTCTCCCATGCACAAAGATGTAAATTTCTGGCGAGAAAATATTACAAGCTTCGAAGAGAACGACTTGAAGATATTGAGGGTCCTAATCACCATTCTGGACAGTTCCAGTGACCCAAGGGCTTTGGCAGTTGCTTGTTTTGATCTTTCACAGTTCATTCAACACCATCCAGCTGGGAGAGTTATAGTGACAGACCTCAAGGCCAAGGAAAGAGTGATGAAACTGATGAATCATGAGAATGCTGAGGTTACCAAATATGCCCTCCTTTGCATTCAAAGGCTCTTTCTAGGTGCCAAGTATGCTAGCTTTCTGCAGGCTTAA | 1560 | 41.35 | MSFLSTKSVSKFLGKVSALCLIALMPNLLMDIGLVAVVWKSFCPLLDCNNAKSADGHRISCSCMGTLSQGTVKFVFILKRRDIPWETYMTTKLISGTSLQLLRRYDNRPESYRAQLLDDDGPAYVRVFVSILRDIFKEETVEYVLALIDEMLTANPKRARLFHDPSLASEDAYEPFLRLLWKGNWFIQEKSCKILALIVSARQKTHDGNFANDDALNSKSKITTIDDVLDGLVKWLCAQLKNPSHPSRAVQTSINCLATLLKEPKVRSSFVQTDGVKLLIPLISPASTQQSIQLLYETCLCVWLLSYYEPAIEFLATSRTLPRLIDVVKSSTKEKVVRVIILTLRNLLYKGTFGAQMVGLGLPQVVQSLKSQAWSDEDLLEALNQLEEGLKENIKKLSSFDKYKQEVLLGHLDWSPMHKDVNFWRENITSFEENDLKILRVLITILDSSSDPRALAVACFDLSQFIQHHPAGRVIVTDLKAKERVMKLMNHENAEVTKYALLCIQRLFLGAKYASFLQA | 519 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 30215705 | 30222150 | + | CmPI595203_10g023790.1 | Cmu10g2379 | 427909 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu10g2379 | 519 | PIRSF | V-ATP_synth_H | 75 | 518 | IPR004908 | GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cmu10g2379 | 519 | CDD | VATPase_H | 77 | 513 | - | - | |
| Cmu10g2379 | 519 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT H | 79 | 518 | IPR004908 | GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cmu10g2379 | 519 | Gene3D | - | 410 | 511 | IPR038497 | - | |
| Cmu10g2379 | 519 | Gene3D | - | 77 | 398 | IPR011989 | - | |
| Cmu10g2379 | 519 | SUPERFAMILY | ARM repeat | 78 | 509 | IPR016024 | - | |
| Cmu10g2379 | 519 | ProSitePatterns | Cytochrome b5 family, heme-binding domain signature. | 465 | 472 | IPR018506 | GO:0020037(InterPro) | |
| Cmu10g2379 | 519 | FunFam | V-type proton ATPase subunit H | 410 | 511 | - | - | |
| Cmu10g2379 | 519 | Pfam | V-ATPase subunit H | 79 | 390 | IPR004908 | GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cmu10g2379 | 519 | Pfam | V-ATPase subunit H | 396 | 508 | IPR011987 | GO:0000221(InterPro)|GO:1902600(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu10g2379 | K02144 | - | - | csv:101217015 | 855.129 |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cmu08g1600 | . | 1 | 998 | Primary Pumps ATPases(2) | AT1G10130 | 83.3 | 0.0e+00 | 1629.4 | |
| Cmu02g2073 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.6 | 0.0e+00 | 1345.9 | |
| Cmu08g1402 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 4.1e-298 | 1020.8 | |
| Cmu02g0505 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 1.2e-292 | 1002.7 | |
| Cmu02g0505 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.7 | 0.0e+00 | 1233.8 | |
| Cmu08g1402 | . | 1 | 807 | Primary Pumps ATPases(2) | AT2G21410 | 73.5 | 0.0e+00 | 1195.3 | |
| Cmu02g2073 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.6 | 2.9e-299 | 1024.6 | |
| Cmu02g0505 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1235.7 | |
| Cmu08g1402 | . | 1 | 807 | Primary Pumps ATPases(2) | AT4G39080 | 74.2 | 0.0e+00 | 1192.6 | |
| Cmu02g2073 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 3.2e-298 | 1021.1 | |
| Cmu08g1392 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cmu08g1393 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cmu11g1570 | . | 90 | 227 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cmu08g1392 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cmu08g1393 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cmu11g1570 | . | 64 | 227 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.2e-66 | 248.4 | |
| Cmu08g1392 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cmu08g1393 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cmu11g1570 | . | 65 | 227 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cmu11g1570 | . | 63 | 184 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.4e-53 | 203.8 | |
| Cmu08g1392 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cmu08g1393 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cmu05g1746 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 82.5 | 2.4e-70 | 262.3 | |
| Cmu08g1238 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.1e-70 | 261.9 | |
| Cmu08g1392 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cmu08g1393 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cmu11g1570 | . | 90 | 227 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cmu05g1746 | . | 11 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 77.5 | 6.2e-73 | 270.8 | |
| Cmu08g1238 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.5e-71 | 266.2 | |
| Cmu03g0800 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.6 | 0.0e+00 | 1672.1 | |
| Cmu03g0800 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.3 | 0.0e+00 | 1671.8 | |
| Cmu08g1600 | . | 1 | 998 | Primary Pumps ATPases(2) | AT1G10130 | 83.3 | 0.0e+00 | 1629.4 | |
| Cmu03g0800 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.7 | 0.0e+00 | 1320.8 | |
| Cmu03g2322 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 3.8e-57 | 217.6 | |
| Cmu02g0413 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.5e-268 | 920.2 | |
| Cmu10g2755 | . | 62 | 169 | Primary Pumps ATPases(2) | AT3G01390 | 80.6 | 3.8e-37 | 151.0 | |
| Cmu01g0784 | . | 261 | 636 | Primary Pumps ATPases(2) | AT1G12840 | 83.0 | 1.0e-179 | 626.3 | |
| Cmu09g2120 | . | 1021 | 1281 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 7.9e-118 | 420.2 | |
| Cmu10g2379 | . | 67 | 519 | Primary Pumps ATPases(2) | AT3G42050 | 77.7 | 1.9e-201 | 698.7 | |
| Cmu08g1392 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cmu08g1393 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cmu11g1570 | . | 65 | 227 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cmu02g0413 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 2.9e-270 | 927.5 | |
| Cmu05g1461 | . | 1 | 182 | Primary Pumps ATPases(2) | AT1G64200 | 73.0 | 1.7e-64 | 242.7 | |
| Cmu02g0413 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 9.4e-266 | 912.5 | |
| Cmu02g2073 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.6 | 0.0e+00 | 1345.9 | |
| Cmu08g1402 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 4.1e-298 | 1020.8 | |
| Cmu02g0505 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 1.2e-292 | 1002.7 | |
| Cmu10g2246 | . | 102 | 443 | Primary Pumps ATPases(2) | AT3G28715 | 92.7 | 2.8e-187 | 651.4 | |
| Cmu05g1461 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.0 | 2.8e-90 | 328.6 | |
| Cmu09g0160 | . | 1 | 623 | Primary Pumps ATPases(2) | AT1G78900 | 93.3 | 0.0e+00 | 1171.4 | |
| Cmu02g0413 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.5e-268 | 920.2 | |
| Cmu02g0413 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 2.9e-270 | 927.5 | |
| Cmu02g0413 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 9.4e-266 | 912.5 | |
| Cmu01g0784 | . | 261 | 636 | Primary Pumps ATPases(2) | AT1G12840 | 83.0 | 1.0e-179 | 626.3 | |
| Cmu09g2120 | . | 1021 | 1281 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 7.9e-118 | 420.2 | |
| Cmu05g1461 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.0 | 2.8e-90 | 328.6 | |
| Cmu05g1461 | . | 1 | 223 | Primary Pumps ATPases(2) | AT3G08560 | 68.6 | 8.8e-76 | 280.4 | |
| Cmu05g1461 | . | 1 | 182 | Primary Pumps ATPases(2) | AT1G64200 | 73.0 | 1.7e-64 | 242.7 | |
| Cmu03g2322 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 3.8e-57 | 217.6 | |
| Cmu10g2755 | . | 62 | 169 | Primary Pumps ATPases(2) | AT3G01390 | 80.6 | 3.8e-37 | 151.0 | |
| Cmu10g2379 | . | 67 | 519 | Primary Pumps ATPases(2) | AT3G42050 | 77.7 | 1.9e-201 | 698.7 | |
| Cmu02g2073 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.6 | 0.0e+00 | 1345.9 | |
| Cmu08g1402 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 4.1e-298 | 1020.8 | |
| Cmu02g0505 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 1.2e-292 | 1002.7 | |
| Cmu02g0505 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.7 | 0.0e+00 | 1233.8 | |
| Cmu08g1402 | . | 1 | 807 | Primary Pumps ATPases(2) | AT2G21410 | 73.5 | 0.0e+00 | 1195.3 | |
| Cmu02g2073 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.6 | 2.9e-299 | 1024.6 | |
| Cmu02g0505 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1235.7 | |
| Cmu08g1402 | . | 1 | 807 | Primary Pumps ATPases(2) | AT4G39080 | 74.2 | 0.0e+00 | 1192.6 | |
| Cmu02g2073 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 3.2e-298 | 1021.1 | |
| Cmu08g1392 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cmu08g1393 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cmu11g1570 | . | 90 | 227 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cmu11g1570 | . | 63 | 184 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.4e-53 | 203.8 | |
| Cmu08g1392 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cmu08g1393 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cmu08g1392 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cmu08g1393 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cmu11g1570 | . | 90 | 227 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cmu08g1392 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cmu08g1393 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cmu11g1570 | . | 64 | 227 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.2e-66 | 248.4 | |
| Cmu08g1392 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cmu08g1393 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cmu11g1570 | . | 65 | 227 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cmu05g1746 | . | 11 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 77.5 | 6.2e-73 | 270.8 | |
| Cmu08g1238 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.5e-71 | 266.2 | |
| Cmu05g1746 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 82.5 | 2.4e-70 | 262.3 | |
| Cmu08g1238 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.1e-70 | 261.9 | |
| Cmu10g2246 | . | 102 | 443 | Primary Pumps ATPases(2) | AT3G28710 | 95.0 | 2.4e-194 | 674.9 | |
| Cmu10g2246 | . | 102 | 443 | Primary Pumps ATPases(2) | AT3G28715 | 92.7 | 2.8e-187 | 651.4 | |
| Cmu03g0800 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.6 | 0.0e+00 | 1672.1 | |
| Cmu03g0800 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.7 | 0.0e+00 | 1320.8 | |
| Cmu08g1600 | . | 1 | 998 | Primary Pumps ATPases(2) | AT1G10130 | 83.3 | 0.0e+00 | 1629.4 | |
| Cmu03g0800 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.3 | 0.0e+00 | 1671.8 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0003959 | 2 | 3 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 3 | 3 | 1 | 43 |