Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2389 ATGAGGGAAGATGATTCAAATTGGTTCTCAAAATGGGAACAACAACTTCCTTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTAATCACCCCTGATCTTGCTTTAGCATTTGATATCACAAACTCAAATCCTCCCATTAATAACAATTCTCATCCACCGCCGCCTCCGCCGCCGCCTCCGGTTCTCACTCAGCCGAGTTCTGCAGATTTTGGGGATTCAGGGGATTTAGGGTCTGGCGCTGGCGACGAACCTGCCAGAACCCTGAAACGGCCGCGGCTTGTCTGGACTCCGCAGCTTCATAAGCGATTCGTTGACGCCGTTGCTCATTTGGGGATAAAAAATGCCGTCCCGAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTAACTCGTGAGAACGTAGCTAGCCATTTGCAGAAATACCGTCTTTATTTGAAGCGTATGCAGGGGATTTCCGGCGGTAGTGGTGGCGGAGCTAGTGCCGGTGGTGGATTGCCTTCAGCCGCTTCAGATCCTGCCACCGATCATTTGTTTGCTAGTTCCCCTGTTCCGGCTCATTTTCTTCACTCTGCTCGGGGTAATTCCGACCATTTCTTGCCGTTTGTTCCCATCGGAGCTCTGCAGCATCACCACCACCAGATGGCCGCCGCCGCTCAGTACCACCGGCAAGTGACTCAGTTTGGGTCGCCGCCGAATGGGCAAGTTGAGCATCCGTTTTTGGCTCGCCCTGTTCACCGGATTGGAGCTCCGGTGAGTACTCCGGCGACGAATTATAGCGAGGATTTGGATACGGGTAATGGAACAGGAGGGAGGAAGGTTCTTACTCTTTTCCCCACCGGAAATGATTAA 852 52.11 MREDDSNWFSKWEQQLPSPDELMPLSQTLITPDLALAFDITNSNPPINNNSHPPPPPPPPPVLTQPSSADFGDSGDLGSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGASAGGGLPSAASDPATDHLFASSPVPAHFLHSARGNSDHFLPFVPIGALQHHHHQMAAAAQYHRQVTQFGSPPNGQVEHPFLARPVHRIGAPVSTPATNYSEDLDTGNGTGGRKVLTLFPTGND 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30304428 30305279 + CmPI595203_10g023890.1 Cmu10g2389 427919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2389 283 FunFam Two-component response regulator 87 150 - -
Cmu10g2389 283 Gene3D - 88 150 - -
Cmu10g2389 283 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 229 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2389 283 MobiDBLite consensus disorder prediction 37 90 - -
Cmu10g2389 283 NCBIfam myb-like DNA-binding domain, SHAQKYF class 92 144 IPR006447 GO:0003677(InterPro)
Cmu10g2389 283 MobiDBLite consensus disorder prediction 252 272 - -
Cmu10g2389 283 MobiDBLite consensus disorder prediction 48 65 - -
Cmu10g2389 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 147 IPR017930 -
Cmu10g2389 283 SUPERFAMILY Homeodomain-like 88 148 IPR009057 -
Cmu10g2389 283 MobiDBLite consensus disorder prediction 10 24 - -
Cmu10g2389 283 MobiDBLite consensus disorder prediction 1 24 - -
Cmu10g2389 283 Pfam Myb-like DNA-binding domain 94 143 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g0523 Cmu-Chr9:4815092 Cmu10g2389 Cmu-Chr10:30304428 4.00E-07 dispersed
Cmu09g0524 Cmu-Chr9:4821987 Cmu10g2389 Cmu-Chr10:30304428 6.10E-11 dispersed
Cmu10g2389 Cmu-Chr10:30304428 Cmu11g0338 Cmu-Chr11:3883216 2.70E-15 dispersed
Cmu10g2389 Cmu-Chr10:30304428 Cmu04g0625 Cmu-Chr4:19965997 2.80E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7024 PF00249 Myb_DNA-binding 2.00E-08 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2389 - - - 0.0