Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2408 ATGGAGGTTTTACAGGCCCTCGATTCTCAGGTTCTCATCGGTTTAGCAGCCGCCTTGATTGCCATTGTTGCTGGTGCTGTTTTCCTCTTTTCCTCCAGAAAACCCGCATCCAGAGCCTGCTTGGATCCTGAGAAGTTTAAGGAGTTTAAGCTTGTTAAGCGTACTAAGCTGAGCCACAATGTGGCGAAGTTCACTTTTATACTTCCCAAGCCCGATTCAATTCTTGGTCTTCCTATTGGACAACATTTAAGTTGCAGGGGAAAGGATGGCCAAGGTGAAGAAGTTATTAAATCTTACACCCCAACTACTTTGGATTCTGATGTTGGATATTTTGAACTAGTCATAAAGATGTATCCCCAAGGCAGGATGTCACATCATTTTCGAGAAATGCGCATTGGGGACTATCTTGCTGTAAAGGGACCAAAGGGACGTTTCAAGTACCAACCTGGTCAAGTTCATGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACACCTATGTACCAAGTTGCTCGGGCTATATTAGAGAACCCGAATGACAAAACAAAGGTTCACCTTATTTATGCCAATGTTACATTAGAAGATATTCTATTGAAGGAGGAATTGGATCTTCTTGCCAAAAGATACCCTGATCGCTTCAAAATCTACTATGTGTTGAACCAGCCTCCTGAAGTTTGGGATGGCGGCGTTGGCTTTGTGTCCAAGGAAATGATCAAAGCACATTGTCCTGCACCAGCCGCTGACATTAAGATTTTACGGTGCGGTCCACCCCCAATGAACAAGGCCATGGGTGACCACCTTGATGCTCTTGGATATTCAGCTGAAATGCAGTTTCAATTCTAA 843 44.37 MEVLQALDSQVLIGLAAALIAIVAGAVFLFSSRKPASRACLDPEKFKEFKLVKRTKLSHNVAKFTFILPKPDSILGLPIGQHLSCRGKDGQGEEVIKSYTPTTLDSDVGYFELVIKMYPQGRMSHHFREMRIGDYLAVKGPKGRFKYQPGQVHAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTLEDILLKEELDLLAKRYPDRFKIYYVLNQPPEVWDGGVGFVSKEMIKAHCPAPAADIKILRCGPPPMNKAMGDHLDALGYSAEMQFQF 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30555041 30559416 + CmPI595203_10g024080.1 Cmu10g2408 427938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2408 280 SUPERFAMILY Riboflavin synthase domain-like 41 149 IPR017938 -
Cmu10g2408 280 Pfam Oxidoreductase NAD-binding domain 157 263 IPR001433 GO:0016491(InterPro)
Cmu10g2408 280 Pfam Oxidoreductase FAD-binding domain 49 147 IPR008333 -
Cmu10g2408 280 FunFam NADH-cytochrome b5 reductase 138 280 - -
Cmu10g2408 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 194 205 IPR001709 GO:0016491(InterPro)
Cmu10g2408 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 156 175 IPR001709 GO:0016491(InterPro)
Cmu10g2408 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 250 258 IPR001709 GO:0016491(InterPro)
Cmu10g2408 280 FunFam NADH-cytochrome b5 reductase 39 138 - -
Cmu10g2408 280 PRINTS Cytochrome B5 reductase signature 250 258 - -
Cmu10g2408 280 PRINTS Cytochrome B5 reductase signature 194 205 - -
Cmu10g2408 280 PRINTS Cytochrome B5 reductase signature 97 104 - -
Cmu10g2408 280 PRINTS Cytochrome B5 reductase signature 133 147 - -
Cmu10g2408 280 PRINTS Cytochrome B5 reductase signature 156 175 - -
Cmu10g2408 280 PRINTS Cytochrome B5 reductase signature 75 86 - -
Cmu10g2408 280 CDD cyt_b5_reduct_like 49 280 - -
Cmu10g2408 280 PANTHER NADH-CYTOCHROME B5 REDUCTASE 19 280 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cmu10g2408 280 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 44 148 IPR017927 GO:0016491(InterPro)
Cmu10g2408 280 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 136 275 IPR039261 -
Cmu10g2408 280 Gene3D Translation factors 36 138 - -
Cmu10g2408 280 Gene3D - 139 280 IPR039261 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0549 Cmu-Chr4:18828661 Cmu10g2408 Cmu-Chr10:30555041 4.50E-135 dispersed
Cmu10g2408 Cmu-Chr10:30555041 Cmu11g0277 Cmu-Chr11:3304757 1.00E-51 dispersed
Cmu10g2408 Cmu-Chr10:30555041 Cmu03g1518 Cmu-Chr3:11989221 7.30E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2408 K00326 - csv:101212931 529.635