Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2450 ATGGTTGATGGGAAAGGACATCGACCTGTCGATGTGATCGTTGCGCCCTTAAGGCATGGCGAGCTTAAATCAACACTTACAGAACTTCTTAAGACAAACGGTTTGTCTGGTGATGGAAATCTTGATGTTTTAACAGGTGCTAGAAATTCGCATTCTCCTCGCCCTTCATCTCCTCTGAATGTCCCCTCATCAGCATCAGAGTTAGTTTCTTCTCCAACAAAGTCGAAACTAAGTGAGTTTCCAATGTTTTCTGCATCTGAGAAGAAAGAATACCCTGTTGATCTTTCTCTTCCAGACATCAAGAATAGTATCTACTCAACTGATGAATTCCGAATGTATTCGTTCAAGGTTCGACCCTGCTCACGTGCTTACTCTCATGATTGGACTGAGTGTCCCTTTGTCCACCCTGGAGAAAATGCCAGGAGGAGGGATCCAAGAAAGTTCCATTATAGCTGTGTACCCTGTCCTGATTTTCGGAAGGGTGCTTGCAGACGAGGAGATATGTGCGAATATGCTCATGGGGTGTTCGAGTGCTGGCTGCACCCAGCACAATATCGAACCCGCCTTTGCAAAGATGGCACAAATTGCTCAAGAAGAGTCTGCTTTTTTGCACACACCACTGAGGAACTGCGCCCTCTGTATGTCTCGACTGGCTCTGCTGTTCCCTCACCACGTTCTTGCACTTCCGGGGCTTCTGCCATGGATTATGCTACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCGGTCCCTGTGATGTCTCCATCACCGTTCACTCCTCCGATGTCTCCATCTGCCAATGGCATGTCTCACTCGTCCGTGGCTTGGCCCCAACCGAATGTACCTGCCTTGCATCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCTCTGAGTGCAAGAGACATGCCTGTAGAGGATTTTGATTATCTGAGTGATTTTGATATGCAACAACAGCAGCTGCTTAACGACTTGAATTGTCTTTCTCAACCACCGTTGAGTTCAAATTCATTGAACCGTTCTGGTCGGCTGAAAACTATGACCCCTTCGAATCTCGATGATCTCTTCTCTGCTGAGAGTTCATCTCCCAGATACTCTGATCAAGCTCTGGCTTCAGCTGTTTTCTCCCCTACACACAAATCAGCAGTTATCAATCAATTTCAGCAACAACAGACTATGTTGTCACCAATCAATACAAATTTCTCTCCTAAAAATGTTGATCACCCTCTATTGCAGGCCTCTTTTGGTGTTCCGTCATCTGGGAGGATGTCTCCACGAAATCTGGAACCCATCTCACCAGTCGGCTCTCGCTTGTCCATGTTAGCTCAAAGAGAGAAACAGCAGTTTCGCAGCCTCAGCTCGCGTGAACTCGGTGCTAATTCTGCCTCTATTGTTGGTTCTCCTGCAAATTCTTGGTCCAAATGGGGACCTTCAAATGGAAGACCTGATTGGGCAGTCAATGCGGATGAAATGGGTAAGCTTCGGCGATCATCGTCTTTTGAGCTCGGGAACAATGGAGAAGAGCCAGATTTATCATGGGTTCAATCACTTGTGAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCCAATTTGGGTGGCGATAGTTTTGTATCTTCTGGTGAGAGTTCTAACATGAACTCGCAAATGGAGGCAGTCGATCATGCTGCATTAGGAGCATGGCTGGAACAAATGCAGCTTGATCATCTCGTCGCGCAACAGAACTGA 1740 46.61 MVDGKGHRPVDVIVAPLRHGELKSTLTELLKTNGLSGDGNLDVLTGARNSHSPRPSSPLNVPSSASELVSSPTKSKLSEFPMFSASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTEELRPLYVSTGSAVPSPRSCTSGASAMDYATVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNIQSSRLRSSLSARDMPVEDFDYLSDFDMQQQQLLNDLNCLSQPPLSSNSLNRSGRLKTMTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAVINQFQQQQTMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPVGSRLSMLAQREKQQFRSLSSRELGANSASIVGSPANSWSKWGPSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNLGGDSFVSSGESSNMNSQMEAVDHAALGAWLEQMQLDHLVAQQN 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31089153 31090892 + CmPI595203_10g024500.1 Cmu10g2450 427980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2450 579 MobiDBLite consensus disorder prediction 41 72 - -
Cmu10g2450 579 ProSiteProfiles Zinc finger C3H1-type profile. 154 176 IPR000571 GO:0046872(InterPro)
Cmu10g2450 579 Gene3D - 149 212 - -
Cmu10g2450 579 SMART c3hfinal6 184 207 IPR000571 GO:0046872(InterPro)
Cmu10g2450 579 SMART c3hfinal6 149 175 IPR000571 GO:0046872(InterPro)
Cmu10g2450 579 PANTHER UNKEMPT FAMILY MEMBER 79 524 IPR045234 -
Cmu10g2450 579 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 153 174 IPR000571 GO:0046872(InterPro)
Cmu10g2450 579 MobiDBLite consensus disorder prediction 43 72 - -
Cmu10g2450 579 FunFam Zinc finger CCCH domain-containing protein 66 107 175 - -
Cmu10g2450 579 MobiDBLite consensus disorder prediction 524 548 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g2005 Cmu-Chr10:25769045 Cmu10g2450 Cmu-Chr10:31089153 2.40E-209 dispersed
Cmu10g2450 Cmu-Chr10:31089153 Cmu11g0187 Cmu-Chr11:2306146 1.10E-50 dispersed
Cmu10g2450 Cmu-Chr10:31089153 Cmu02g1948 Cmu-Chr2:33329621 4.90E-104 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7031 PF00642 zf-CCCH 5.50E-05 CL0537 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2450 - - - 0.0