Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2462 ATGGATGACCCTTCCACTAACTTCTTCTTCACAAATCTCTTCAAATTCAACTCTCCCACCACTACCAATTTCCCCCACCACCACCACCCTTCTTCTTCTTCTTCTTCTTCAAACCCTTTTCCTCCTCCTCCTCCTCCTCCTCCCAATTTCTTCCCCACTTTCCACCACCCTCCGCCGCCATCCTCTCCACCGCTCCGCCAAGCTCTCCCTCTCCTTAGCCTTAGCCCCACACGATCATCACAAGAGAAAAACAACAAGGAAGAGGAAAAGGAAGAAACTTTAATGAGAGTTGCACTTCATATAGGGTTACCAAGCCCTAGGGCTGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGATCAAGAATTAGAAGAAGAAGAAGAATTAGAAGATCAAGAAGAAGAAGAAGAAGTAGCAATTTCAGGATTGTGTTTGAGTAATAGTAGACTTAACAAAGGACAATATTGGATCCCAACTCCTTCACAAATCCTCATTGGACCTACTCAATTCTCTTGTCCTGTTTGTTACAAAACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGGTCACAATACAGGAGAGGACCAGAATCGTTAAGAGGAACACAACCAACAGGGATGTTAAGGCTGCCATGTTATTGCTGCTCACCAGGTTGCCGCAACAACATTGACCATCCAAGAGCAAAGCCTTTAAAGGATTTCAGAACTCTTCAAACTCATTACAAACGCAAGCATGGAATCAAGCCTTTCATGTGTAGGAAATGTGGGAAAGCCTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCATTTGTGGATCTGATTTTAAGCACAAAAGATCTCTCAAAGACCACATCAAAGCCTTTGGAAATGGCCATGCTGCTTATAATCATTCTAATAATAACGCTAATAACAATAATTCTGATCAACATCGTCGTCATCATCATCGGCATCATCGACTTCATGGGTTCGATGAAGAGGATGACCATGCTTATTCTGAAGTTGAGCAAGATCATGATTGA 1062 42.47 MDDPSTNFFFTNLFKFNSPTTTNFPHHHHPSSSSSSSNPFPPPPPPPPNFFPTFHHPPPPSSPPLRQALPLLSLSPTRSSQEKNNKEEEKEETLMRVALHIGLPSPRAEEEEGEEEEEEEDQELEEEEELEDQEEEEEVAISGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNHSNNNANNNNSDQHRRHHHRHHRLHGFDEEDDHAYSEVEQDHD 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31211233 31213833 + CmPI595203_10g024620.1 Cmu10g2462 427992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2462 353 Coils Coil 107 140 - -
Cmu10g2462 353 MobiDBLite consensus disorder prediction 81 96 - -
Cmu10g2462 353 MobiDBLite consensus disorder prediction 19 35 - -
Cmu10g2462 353 SUPERFAMILY beta-beta-alpha zinc fingers 167 193 IPR036236 -
Cmu10g2462 353 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 254 278 - -
Cmu10g2462 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 198 IPR013087 -
Cmu10g2462 353 PANTHER ZINC FINGER PROTEIN WIP2 25 326 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cmu10g2462 353 MobiDBLite consensus disorder prediction 36 66 - -
Cmu10g2462 353 MobiDBLite consensus disorder prediction 306 353 - -
Cmu10g2462 353 SUPERFAMILY beta-beta-alpha zinc fingers 237 275 IPR036236 -
Cmu10g2462 353 FunFam zinc finger protein WIP2-like 170 193 - -
Cmu10g2462 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 275 IPR013087 -
Cmu10g2462 353 SMART c2h2final6 255 275 IPR013087 -
Cmu10g2462 353 SMART c2h2final6 171 193 IPR013087 -
Cmu10g2462 353 Gene3D Classic Zinc Finger 170 193 - -
Cmu10g2462 353 MobiDBLite consensus disorder prediction 19 140 - -
Cmu10g2462 353 FunFam Zinc finger protein WIP2 224 306 - -
Cmu10g2462 353 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
Cmu10g2462 353 MobiDBLite consensus disorder prediction 109 139 - -
Cmu10g2462 353 MobiDBLite consensus disorder prediction 334 353 - -
Cmu10g2462 353 Gene3D Classic Zinc Finger 232 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1191 Cmu-Chr1:22315858 Cmu10g2462 Cmu-Chr10:31211233 7.40E-84 dispersed
Cmu03g1572 Cmu-Chr3:15833256 Cmu10g2462 Cmu-Chr10:31211233 9.30E-85 dispersed
Cmu04g0161 Cmu-Chr4:3256517 Cmu10g2462 Cmu-Chr10:31211233 2.90E-101 dispersed
Cmu09g0403 Cmu-Chr9:3882760 Cmu10g2462 Cmu-Chr10:31211233 7.70E-88 dispersed
Cmu10g2462 Cmu-Chr10:31211233 Cmu02g2312 Cmu-Chr2:36662979 7.40E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7034 None None None None Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2462 - - - 0.0