Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2465 ATGGAGATTAAAGTAGGAACTGTAGTTGGATCCAGTCCAATCGGGCGTCAATCGGATGATACTGGACTTGAGTCGCTTCAATTCTGCGAAGAAATTCAGGGGTTGATGACGATTCCGGCGGAAAATGCTAGCTCCTTCACGGCACTTCTGGAACTTCCGGCGACGCAGGCTTTAGAGCTACTCCACTCGCCGGATTCCGGCGGTGGCGCCACGGCGGCGGTTGTGAACGATGATTCCTTTCAACACTGTATCAAAGACGTTCCGAAACCCTACTTCAGTGCCTTCAATTGCAATTTGACCTTCCCGACGAACTCGGCTCTAATTGAACGCGCTGCCAAGCTCTCGGTCTTGGCCGAAGAGCATTCGCCGGAGACGACTAGTTCAGTGCTGTTGAATTCGAGTGTCAATTTGGAGAAGGTGAAGAACGAGCCCACCACTGAAACCGATTCGAACCCTAATCCCTTGCAGACTTTAATCTCCGATCCGACGGTGGAGAACACGAACCAGAGATCGGCGAAGAGGAAGGAGCGCGAGAAAAAGGGAAAAGGGTCAACAAAGAAGAGCAAGAACGAAAGCAACGAGGATGCCGAAAAGCTTCCTTATGTTCATGTCCGAGCTCGCCGCGGTCAAGCGACGGACAGCCATAGCCTAGCAGAACGAGCGAGGAGAGAGAAAATCAATGCTCGGATGAAGCTACTTCAAGAACTGGTCCCTGGCTGCAATAAGATCTCAGGCACAGCCCTAGTGTTGGATGAAATCATCAACCATGTACAATCACTGCAGCGTCAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGCAGAAAACGAACCCGTACTCGAAAGCTCATTTCCGACGATGGTAACGCCATTGATGTGGCCAGAAATCCCAGTAAGTGGAACAAGACAACAATATCAACCCCAATGGCATTTTGATGGTTCAGTTAACCAGCAAGCTTGGGCGAGGGATGAACATAATCATCATAATTTCAGCACTCCTGAAAACTCTCTTTTAAGTTATGATTCTTCAGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTGTGA 1119 48.7 MEIKVGTVVGSSPIGRQSDDTGLESLQFCEEIQGLMTIPAENASSFTALLELPATQALELLHSPDSGGGATAAVVNDDSFQHCIKDVPKPYFSAFNCNLTFPTNSALIERAAKLSVLAEEHSPETTSSVLLNSSVNLEKVKNEPTTETDSNPNPLQTLISDPTVENTNQRSAKRKEREKKGKGSTKKSKNESNEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPVLESSFPTMVTPLMWPEIPVSGTRQQYQPQWHFDGSVNQQAWARDEHNHHNFSTPENSLLSYDSSANSASLHSNQLKMEL 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31251455 31255836 - CmPI595203_10g024650.1 Cmu10g2465 427995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2465 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 260 IPR011598 GO:0046983(InterPro)
Cmu10g2465 372 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 118 332 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cmu10g2465 372 MobiDBLite consensus disorder prediction 183 201 - -
Cmu10g2465 372 Pfam Helix-loop-helix DNA-binding domain 214 261 IPR011598 GO:0046983(InterPro)
Cmu10g2465 372 SMART finulus 216 266 IPR011598 GO:0046983(InterPro)
Cmu10g2465 372 Coils Coil 250 270 - -
Cmu10g2465 372 Gene3D - 207 280 IPR036638 GO:0046983(InterPro)
Cmu10g2465 372 MobiDBLite consensus disorder prediction 140 167 - -
Cmu10g2465 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 279 IPR036638 GO:0046983(InterPro)
Cmu10g2465 372 CDD bHLH_AtBPE_like 200 285 - -
Cmu10g2465 372 MobiDBLite consensus disorder prediction 140 201 - -
Cmu10g2465 372 FunFam transcription factor bHLH48-like isoform X1 207 279 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g2465 Cmu-Chr10:31251455 Cmu11g0442 Cmu-Chr11:4854418 2.20E-33 dispersed
Cmu10g2465 Cmu-Chr10:31251455 Cmu02g0518 Cmu-Chr2:4806900 1.40E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7035 PF00010 HLH 1.40E-05 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2465 - - - 0.0