Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2471 ATGGCTTCTTCCAATATTAAAAGCACCTCCATCATCCAACAAGCAAACCAGCAAGAAGAAGAAAAACAACAACAACAACTTCTTCTTCATCATCAACAACAACAACCTCAACTTTTACAAACTCCAAGCTTTGTCATCTCATCAAACTCAAAAAATTCCTCATTATTCAACTTCCAAAACCCCAATTTTCCTGATCATCATCATCATCATCATCAATTACCCTTCTCCATGAATCTCCCTTCCATCCCTTCAAATTTCTTAAGCAAAGATGGAGGAGGAGATGATTTGGGGGAGTTGGATCAAGCTCTTTTTCTCTATCTTGATGGACAAGAACCCTCTACAACCACTACTCAAGACCAAAGACAGAGTTTGGGCATGAGACCTCCGACTTTGAACATCTTCCCGTCGCAGCCGATGCATGTCGACCCGTTACCAATAAAAGGAAATACAGCATTGATAAACCATAGTGATTCAAAGATCAAAGCATCTGAGCCGTCCAGAGAGTTGGCCAACCAACGCAGCAGCAATGGAGCCACTGCATCTGGACCACCCCCAACCCAAACTACAACAACCGAACCTCATCCCAAACCTCCCAAACGTGAGCCCAACAAAAAAGGACTAACCTCAAGCTCAGAACAAGAAGGACCCAAAACCCCAGACCCCAAGACCTTAAGAAGATTGGCTCAAAATCGAGAGGCCGCTAGAAAGAGCAGACTTAGAAAAAAGGCGTATGTTCAGCAGTTAGAGATGAGTAGGATTAAGCTCACCCAGCTGGAGCAAGAACTACAAAGAGCAAGAACTCAGGGCATGTTTCTGGGTGGAGGAGCCGCCATTTTAGGACCTGACCAAGGACTTCCCTCTGGCTTCTATAACCTCAGCTCCGATGCTGCGGTGTTCGACATTGAGTATGGACGGTGGCAAGAGGAGCACCACCGGCTAATGTGCGAGCTCCGAGCAGCAGTGCAAGAGCAGCTACCGGAGAACGAGTTGCGGTTGTTCGTGGACAGCTGCCTGGCCCATTACGACGAGGTTCTGAACTTGAAGATGATGGTGGCTAAGTCGGACGTGTTCCACCTTGTCTCCGGCATGTGGAAAACGCCGGCGGAGAGATGCTTCATGTGGATGGGAGATTTTAGGCCCTCCGAACTCATTAAGATAATAATGGGTCAACTAGAGCCATTAACAGAGCATCAAATATTAAACATTTGTGCATTGCAACAATCAACACAAGAGAGTGAAGAAGCATTGTCTCAAGGACTTGAAGCCCTAAATCAGTCCTTATCAGACACCATCACCTCTGATTCATTGAGTAGCCCTCCCAATATGGCTAACTATATGGGCCAAATGACCTTAGCCATCAACAAGCTCTCCACTCTTGAAGGCTTTGTAAGACAGGCAGAGAATTTGAGACACCAAACGATTCACCGATTGCAACAAATGTTGACAACTCGACAAGCAGCAAGATGTTTATTAGCCATTGCTGAATATTTTCATAGGCTTCGAGCTTTGAGTTCCCTATGGTTGGCTCGTCCAAGGCAAGATTAA 1545 45.83 MASSNIKSTSIIQQANQQEEEKQQQQLLLHHQQQQPQLLQTPSFVISSNSKNSSLFNFQNPNFPDHHHHHHQLPFSMNLPSIPSNFLSKDGGGDDLGELDQALFLYLDGQEPSTTTTQDQRQSLGMRPPTLNIFPSQPMHVDPLPIKGNTALINHSDSKIKASEPSRELANQRSSNGATASGPPPTQTTTTEPHPKPPKREPNKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLEMSRIKLTQLEQELQRARTQGMFLGGGAAILGPDQGLPSGFYNLSSDAAVFDIEYGRWQEEHHRLMCELRAAVQEQLPENELRLFVDSCLAHYDEVLNLKMMVAKSDVFHLVSGMWKTPAERCFMWMGDFRPSELIKIIMGQLEPLTEHQILNICALQQSTQESEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQAENLRHQTIHRLQQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31315563 31323637 - CmPI595203_10g024710.1 Cmu10g2471 428001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2471 514 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 264 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2471 514 PANTHER TRANSCRIPTION FACTOR TGA9 130 513 - -
Cmu10g2471 514 Pfam Seed dormancy control 314 388 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cmu10g2471 514 SUPERFAMILY Leucine zipper domain 222 264 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2471 514 CDD bZIP_HBP1b-like 222 274 - -
Cmu10g2471 514 MobiDBLite consensus disorder prediction 167 187 - -
Cmu10g2471 514 MobiDBLite consensus disorder prediction 1 34 - -
Cmu10g2471 514 Coils Coil 15 35 - -
Cmu10g2471 514 Coils Coil 241 268 - -
Cmu10g2471 514 MobiDBLite consensus disorder prediction 109 130 - -
Cmu10g2471 514 ProSiteProfiles DOG1 domain profile. 296 510 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cmu10g2471 514 FunFam BZIP family transcription factor 221 270 - -
Cmu10g2471 514 SMART brlzneu 218 273 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2471 514 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 225 240 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2471 514 Pfam Basic region leucine zipper 219 263 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2471 514 Gene3D - 221 271 - -
Cmu10g2471 514 MobiDBLite consensus disorder prediction 109 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2197 Cmu-Chr2:35617709 Cmu10g2471 Cmu-Chr10:31315563 6.10E-90 dispersed
Cmu10g2370 Cmu-Chr10:30140364 Cmu10g2471 Cmu-Chr10:31315563 3.20E-74 dispersed
Cmu10g2471 Cmu-Chr10:31315563 Cmu11g0914 Cmu-Chr11:12420174 2.30E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7037 PF14144 DOG1 6.10E-31 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2471 K14431 - csv:101204923 835.099