Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2488 ATGTTTTCGTGGCTGGCAAGGATGGCGTCGGCTTGTTGGAAACCAGTGAGGCGGTATGCCCGTATGAACAAGGATGATGATGAAGATTGTTCTTTAGAGGACTCTTTGTTGTGGAGCAGAGAGCTTGAAAAGCACTCTTATGGGGAATTTTCTTTTGCTGTGGTTCAGGCTAATGAGGTAATTGAGGATAATAGTCAGGTTGAGACTGGCCCAGATGCCACTTTCGTCGGCGTTTATGATGGCCATGGTGGCCCTGATGCTTCTCGCTTTATCTGTGATCATCTTTTCAGGAATCTAATGAGGCTTGCTCAAGAGAATGGAAATATAACTGAAGATATCCTTCGAAGTGCATTTTCTGCAACTGAGGAAGGGTTTCTTACTCTTGTTCGTCGGTCATGGGGAATAAAGCCAACAATTGCAGCTATGGGATCTTGTTGCCTGGTGGGAGTTATCTGGAGAGGTACATTATACGTCGGTAACGTCGGTGATTCCCGGGCTGTTATTGGTTCTTTAGGTAAATCTAATAAGATAGTTGCAGAACAGTTGACAAGGGATCATAATGCAAGTATCGAGGAGGTTAGACAAGAACTCAGGTCCTTGCATCCTGATGACTCACATATCGTTGTTATGAAGCACGGAGTCTGGCGTATTAAAGGCATTATTCAGGTTTCCAGATCGATAGGTGATGCATATTTAAAAAAGCCAGAGTTTTCTCTTGATCCATCCTTTCCACGGTTCCACCTTGCGGAGCCTCTTCGACGGCCTGTTCTTACTGCGGAACCATCGTTAAGTACAAGAGTTCTACAACCTAATGACAAATTTCTCATATTTGCATCTGATGGCCTATGGGAGCATCTAACGAATCAACAAGCTGTCGAGATTGTGTATAATAACCCAAGAGCAGGAATTGCAAAAAGACTTGTTAAAACAGCGCTAACTGAGGCTGCAAGGAAGAGGGAAATGAGATATGATGATCTGAAGAAGCTCGAAAAGGGCATACGACGGTTTTTTCATGATGATATCACAGTTGTTGTCATCTTTCTGGACTATGAGTTGCAAGGGAAGAAGGCACGTGTGCCAGAATTATCTGTTCGTGGGTTTACTGATACCGTTGGACCGTCAAATTTCAATGTTCTTCGAGGCATTGATGAGAATGGAAAGTCTGTTGGGTGA 1173 43.82 MFSWLARMASACWKPVRRYARMNKDDDEDCSLEDSLLWSRELEKHSYGEFSFAVVQANEVIEDNSQVETGPDATFVGVYDGHGGPDASRFICDHLFRNLMRLAQENGNITEDILRSAFSATEEGFLTLVRRSWGIKPTIAAMGSCCLVGVIWRGTLYVGNVGDSRAVIGSLGKSNKIVAEQLTRDHNASIEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKKPEFSLDPSFPRFHLAEPLRRPVLTAEPSLSTRVLQPNDKFLIFASDGLWEHLTNQQAVEIVYNNPRAGIAKRLVKTALTEAARKREMRYDDLKKLEKGIRRFFHDDITVVVIFLDYELQGKKARVPELSVRGFTDTVGPSNFNVLRGIDENGKSVG 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31532324 31535187 + CmPI595203_10g024880.1 Cmu10g2488 428018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2488 390 FunFam Probable protein phosphatase 2C 42 40 356 - -
Cmu10g2488 390 PANTHER PROTEIN PHOSPHATASE 40 347 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cmu10g2488 390 SUPERFAMILY PP2C-like 53 349 IPR036457 -
Cmu10g2488 390 Gene3D - 27 358 IPR036457 -
Cmu10g2488 390 SMART PP2C_4 43 346 IPR001932 -
Cmu10g2488 390 Pfam Protein phosphatase 2C 69 317 IPR001932 -
Cmu10g2488 390 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169(InterPro)
Cmu10g2488 390 CDD PP2Cc 47 348 IPR001932 -
Cmu10g2488 390 ProSiteProfiles PPM-type phosphatase domain profile. 49 348 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0705 Cmu-Chr2:7231205 Cmu10g2488 Cmu-Chr10:31532324 1.10E-117 dispersed
Cmu10g2488 Cmu-Chr10:31532324 Cmu10g2790 Cmu-Chr10:34491879 3.80E-116 dispersed
Cmu10g2488 Cmu-Chr10:31532324 Cmu01g2001 Cmu-Chr1:33235040 4.00E-118 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2488 K01102 - csv:101222146 762.681