Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2489 ATGACCGAAAAGTTAGACAGCTGGATCCAACGAGAACGTGACGCACTCAGTCCATTGCTATTGCTATTGCCATTGCCACCACCTCGACAGTTTCAAGAACACGAAGCTTTCTTGATTTCTAAGCTCAGAAATCATGATCGAGCAAACATTTTGCGACAATTCACAATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTCCCTAGCATCGTTGGTCGCCCCAGACACACCGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGGATTTTGACTTTAAAATATCCCATCGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCCTTGAATCCTAAGGCGAATAGAGAGAAAATGACCCAAATTATGTTTGAGACTTTCAACACCCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGGATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTCCGTCTAGACCTGGCTGGCCGTGATCTCACAGATGCTCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACCGCCGAGCGTGAAATTGTGAGAGATATGAAGGAGAAACTAGCTTACATAGCCCTGGACTACGAGCAAGAGCTAGAGACATCAAAAACCAGCTCTTCAGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGATTCCGATGCCCTGAAGTCTTGTTCCAGCCATCCATGATAGGCATGGAAGCAGCTGGTATTCATGAAACCACATACAATTCAATCATGAAGTGTGATGTCGATATTAGAAAGGATCTCTATGGAAACATTGTCCTCAGTGGTGGTTCCACTATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGAGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCATCAATTGTTCACAGGAAATGCTTCTGA 1299 46.5 MTEKLDSWIQRERDALSPLLLLLPLPPPRQFQEHEAFLISKLRNHDRANILRQFTMADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31536873 31540524 - CmPI595203_10g024890.1 Cmu10g2489 428019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2489 432 FunFam Major actin 315 395 - -
Cmu10g2489 432 SMART actin_3 62 432 IPR004000 -
Cmu10g2489 432 SUPERFAMILY Actin-like ATPase domain 61 210 IPR043129 -
Cmu10g2489 432 FunFam Actin, alpha skeletal muscle 58 223 - -
Cmu10g2489 432 ProSitePatterns Actins signature 1. 110 120 IPR004001 -
Cmu10g2489 432 Gene3D Actin; Chain A, domain 4 237 328 - -
Cmu10g2489 432 Gene3D - 195 395 - -
Cmu10g2489 432 CDD NBD_sugar-kinase_HSP70_actin 65 238 - -
Cmu10g2489 432 ProSitePatterns Actins signature 2. 413 421 IPR004001 -
Cmu10g2489 432 FunFam Putative actin-related protein 5 396 424 - -
Cmu10g2489 432 PANTHER ACTIN 63 424 IPR004000 GO:0005737(PANTHER)
Cmu10g2489 432 FunFam Actin, muscle 237 328 - -
Cmu10g2489 432 Pfam Actin 60 432 IPR004000 -
Cmu10g2489 432 ProSitePatterns Actins and actin-related proteins signature. 161 173 IPR020902 -
Cmu10g2489 432 Gene3D - 65 426 - -
Cmu10g2489 432 SUPERFAMILY Actin-like ATPase domain 204 432 IPR043129 -
Cmu10g2489 432 PRINTS Actin signature 293 309 IPR004000 -
Cmu10g2489 432 PRINTS Actin signature 197 216 IPR004000 -
Cmu10g2489 432 PRINTS Actin signature 106 117 IPR004000 -
Cmu10g2489 432 PRINTS Actin signature 172 185 IPR004000 -
Cmu10g2489 432 PRINTS Actin signature 118 140 IPR004000 -
Cmu10g2489 432 PRINTS Actin signature 83 92 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2489 K10355 - - mdm:103443130 750.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1515 Cmu-Chr1:28733294 Cmu10g2489 Cmu-Chr10:31536873 2.00E-215 dispersed
Cmu02g0070 Cmu-Chr2:722978 Cmu10g2489 Cmu-Chr10:31536873 2.00E-215 dispersed
Cmu02g2013 Cmu-Chr2:33870407 Cmu10g2489 Cmu-Chr10:31536873 3.70E-217 dispersed
Cmu07g0369 Cmu-Chr7:3658119 Cmu10g2489 Cmu-Chr10:31536873 9.60E-218 dispersed
Cmu09g1346 Cmu-Chr9:19718583 Cmu10g2489 Cmu-Chr10:31536873 1.10E-211 dispersed
Cmu09g1894 Cmu-Chr9:35047081 Cmu10g2489 Cmu-Chr10:31536873 1.80E-216 dispersed
Cmu10g2489 Cmu-Chr10:31536873 Cmu11g0783 Cmu-Chr11:8388189 1.50E-94 dispersed
Cmu10g2489 Cmu-Chr10:31536873 Cmu04g0858 Cmu-Chr4:23120473 1.10E-217 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1271 . . . . Bpe04g01456 Bpe03g01148 . . Cmo06g00095 Cmo14g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02242 . Blo09g00434 Bda03g01592 Bda05g01088 . . . . Sed14g0483 . . Cma06g00102 . Car06g00084 Car14g00382 Cpe03g00368 . Bhi11g02537 Tan08g1503 Cmetu10g1839 Lac10g2624 Hepe05g0523 . . Cla10g01670 Cam10g1718 Cec10g1770 Cco10g1738 Clacu10g1739 Cmu10g2489 Cre10g1871 Lsi03g01737 Csa03g03574 Chy04g01779 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.7e-215 743.0
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT2G37620 96.8 7.7e-215 743.0
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.8e-214 740.7
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 738.4
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.5e-213 738.0
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.5e-213 738.0
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.2e-212 735.7
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.2e-214 741.5
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 5.0e-214 740.3
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT5G59370 97.1 6.5e-214 740.0
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.2e-213 736.5
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT5G59370 93.9 8.8e-211 729.6
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 1.0e-214 742.7
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.5e-214 740.0
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.2e-213 737.6
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.5e-215 743.8
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 3.8e-214 740.7
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.9e-213 738.4
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.4e-213 736.1
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.4e-213 736.1
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.8e-209 723.8
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.8e-209 723.8
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.4e-208 721.5
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.1e-208 719.5
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 9.7e-210 726.1
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT1G49240 92.6 6.3e-209 723.4
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.2e-209 723.0
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.2e-217 749.6
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.2e-217 749.6
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT5G09810 96.6 6.5e-214 740.0
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.9e-213 738.4
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.6e-212 734.2
Cmu11g0197 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.7e-57 216.5
Cmu09g0024 . 324 454 Cytoskeleton Gene Families AT2G19760 72.5 3.7e-55 211.1
Cmu07g1316 . 532 662 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Cmu11g1503 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 5.3e-54 207.2
Cmu11g0198 . 1 111 Cytoskeleton Gene Families AT2G19760 79.3 1.1e-48 189.5
Cmu11g0197 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cmu09g0024 . 324 454 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cmu07g1316 . 532 662 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Cmu11g1503 . 1 131 Cytoskeleton Gene Families AT4G29350 71.0 8.4e-52 199.9
Cmu11g0198 . 1 111 Cytoskeleton Gene Families AT4G29350 79.3 1.6e-47 185.7
Cmu11g0198 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.7e-38 153.7
Cmu11g0197 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Cmu09g0024 . 324 454 Cytoskeleton Gene Families AT4G29340 73.9 3.1e-57 218.0
Cmu11g1503 . 1 131 Cytoskeleton Gene Families AT4G29340 73.1 2.4e-54 208.4
Cmu07g1316 . 532 662 Cytoskeleton Gene Families AT4G29340 67.9 5.1e-52 200.7
Cmu11g0198 . 1 112 Cytoskeleton Gene Families AT4G29340 67.0 7.3e-43 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276