Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2489 ATGACCGAAAAGTTAGACAGCTGGATCCAACGAGAACGTGACGCACTCAGTCCATTGCTATTGCTATTGCCATTGCCACCACCTCGACAGTTTCAAGAACACGAAGCTTTCTTGATTTCTAAGCTCAGAAATCATGATCGAGCAAACATTTTGCGACAATTCACAATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTCCCTAGCATCGTTGGTCGCCCCAGACACACCGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGGATTTTGACTTTAAAATATCCCATCGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCCTTGAATCCTAAGGCGAATAGAGAGAAAATGACCCAAATTATGTTTGAGACTTTCAACACCCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGGATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTCCGTCTAGACCTGGCTGGCCGTGATCTCACAGATGCTCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACCGCCGAGCGTGAAATTGTGAGAGATATGAAGGAGAAACTAGCTTACATAGCCCTGGACTACGAGCAAGAGCTAGAGACATCAAAAACCAGCTCTTCAGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGATTCCGATGCCCTGAAGTCTTGTTCCAGCCATCCATGATAGGCATGGAAGCAGCTGGTATTCATGAAACCACATACAATTCAATCATGAAGTGTGATGTCGATATTAGAAAGGATCTCTATGGAAACATTGTCCTCAGTGGTGGTTCCACTATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGAGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCATCAATTGTTCACAGGAAATGCTTCTGA 1299 46.5 MTEKLDSWIQRERDALSPLLLLLPLPPPRQFQEHEAFLISKLRNHDRANILRQFTMADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31536873 31540524 - CmPI595203_10g024890.1 Cmu10g2489 428019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2489 432 FunFam Major actin 315 395 - -
Cmu10g2489 432 SMART actin_3 62 432 IPR004000 -
Cmu10g2489 432 SUPERFAMILY Actin-like ATPase domain 61 210 IPR043129 -
Cmu10g2489 432 FunFam Actin, alpha skeletal muscle 58 223 - -
Cmu10g2489 432 ProSitePatterns Actins signature 1. 110 120 IPR004001 -
Cmu10g2489 432 Gene3D Actin; Chain A, domain 4 237 328 - -
Cmu10g2489 432 Gene3D - 195 395 - -
Cmu10g2489 432 CDD NBD_sugar-kinase_HSP70_actin 65 238 - -
Cmu10g2489 432 ProSitePatterns Actins signature 2. 413 421 IPR004001 -
Cmu10g2489 432 FunFam Putative actin-related protein 5 396 424 - -
Cmu10g2489 432 PANTHER ACTIN 63 424 IPR004000 GO:0005737(PANTHER)
Cmu10g2489 432 FunFam Actin, muscle 237 328 - -
Cmu10g2489 432 Pfam Actin 60 432 IPR004000 -
Cmu10g2489 432 ProSitePatterns Actins and actin-related proteins signature. 161 173 IPR020902 -
Cmu10g2489 432 Gene3D - 65 426 - -
Cmu10g2489 432 SUPERFAMILY Actin-like ATPase domain 204 432 IPR043129 -
Cmu10g2489 432 PRINTS Actin signature 293 309 IPR004000 -
Cmu10g2489 432 PRINTS Actin signature 197 216 IPR004000 -
Cmu10g2489 432 PRINTS Actin signature 106 117 IPR004000 -
Cmu10g2489 432 PRINTS Actin signature 172 185 IPR004000 -
Cmu10g2489 432 PRINTS Actin signature 118 140 IPR004000 -
Cmu10g2489 432 PRINTS Actin signature 83 92 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1515 Cmu-Chr1:28733294 Cmu10g2489 Cmu-Chr10:31536873 2.00E-215 dispersed
Cmu02g0070 Cmu-Chr2:722978 Cmu10g2489 Cmu-Chr10:31536873 2.00E-215 dispersed
Cmu02g2013 Cmu-Chr2:33870407 Cmu10g2489 Cmu-Chr10:31536873 3.70E-217 dispersed
Cmu07g0369 Cmu-Chr7:3658119 Cmu10g2489 Cmu-Chr10:31536873 9.60E-218 dispersed
Cmu09g1346 Cmu-Chr9:19718583 Cmu10g2489 Cmu-Chr10:31536873 1.10E-211 dispersed
Cmu09g1894 Cmu-Chr9:35047081 Cmu10g2489 Cmu-Chr10:31536873 1.80E-216 dispersed
Cmu10g2489 Cmu-Chr10:31536873 Cmu11g0783 Cmu-Chr11:8388189 1.50E-94 dispersed
Cmu10g2489 Cmu-Chr10:31536873 Cmu04g0858 Cmu-Chr4:23120473 1.10E-217 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2489 K10355 - mdm:103443130 750.74