Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2495 ATGGGTGATGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCGAATTCGGTTCCAAATGAAGATGTCAATTTAGCTGATTTGACAGAGGAACCTGTTCATAGATTTGGGGAAGCTATCAGGTTTAGGACAAGACAACGGTGGAGAAGGCGTCAAGTTCAAATTCCTTCTGAGACTCAGAATATTACAATGGAATTGAGTGAAATCATGGTCAATGCAGGCAATGGGAATGCATTGCAGCCATTACAGCCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGACAGGGAAAACGTGTGAAATTAATAATGAAGCTTTGGAAGATGAAAAAACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGCAATATATGTCTGGATTTGGCTAGGGACCCCGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCGTGTCTTTATCGATGGTTACATCTACATTCAGAAGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACGAAGAACGTGACTCCAATTTATGGTCGTGGCAGCAGTACCCCTGTGACTGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCCCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATCCGGAGGACTGCATTTAGTTTCCCAGTGGAGGATGTGATTCGACGATTAGGATACAGATTTGATGTCAATCGTGATCTAGACCAACCGCCAGAGCCAGAGCCAGAGCCAGACAGTTCACATGAGACATTTGGTAGATCTCCAACCTTGTTGAATAGGATTTTAACATCCAGGGGCATTCGTAGAGAACAAATTTCACTGCCCCCTCATGATGATGTAGGAGATTTAGCACACACTGATGTGTCTAGCGTTGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACCGGACAAGAGTTTCTTCTCTCACTTCTGCATTTAATTCTGCTGATAGGCTTCCAGATGGTTTTTTGTATACTGATCCTCTCATTCCTAGAAGTCAAGAGCAGCCTCCTCCACCTGTTGAGGATAGAGATTCGTTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCTATTTCAACATCATCCTCCAGAAGGAGAAATGATACTTTACAAGTTTCTGATGTAGACAGTGGAAACTCTCGAGCACCAAGAAGGAGAAGATTGGCTTGA 1290 43.64 MGDEIFDAMNLDLNLGPIPEPLSNSVPNEDVNLADLTEEPVHRFGEAIRFRTRQRWRRRQVQIPSETQNITMELSEIMVNAGNGNALQPLQPGEGSITAEERKNETGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGSSTPVTEEDATLKIPLRPHARKVESLRQTIRRTAFSFPVEDVIRRLGYRFDVNRDLDQPPEPEPEPDSSHETFGRSPTLLNRILTSRGIRREQISLPPHDDVGDLAHTDVSSVEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGFLYTDPLIPRSQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRNDTLQVSDVDSGNSRAPRRRRLA 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31599785 31601074 + CmPI595203_10g024950.1 Cmu10g2495 428025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2495 429 SUPERFAMILY RING/U-box 137 194 - -
Cmu10g2495 429 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Cmu10g2495 429 MobiDBLite consensus disorder prediction 250 274 - -
Cmu10g2495 429 MobiDBLite consensus disorder prediction 352 371 - -
Cmu10g2495 429 MobiDBLite consensus disorder prediction 250 267 - -
Cmu10g2495 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 108 367 IPR045103 GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
Cmu10g2495 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 196 IPR013083 -
Cmu10g2495 429 MobiDBLite consensus disorder prediction 398 418 - -
Cmu10g2495 429 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Cmu10g2495 429 CDD RING-HC_AtRMA-like 139 182 - -
Cmu10g2495 429 FunFam Zinc finger family protein 122 195 - -
Cmu10g2495 429 Pfam Zinc finger, C3HC4 type (RING finger) 141 181 IPR018957 GO:0046872(InterPro)
Cmu10g2495 429 MobiDBLite consensus disorder prediction 398 429 - -
Cmu10g2495 429 SMART ring_2 141 181 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1572 Cmu-Chr1:29352878 Cmu10g2495 Cmu-Chr10:31599785 9.40E-24 dispersed
Cmu05g1338 Cmu-Chr5:16286286 Cmu10g2495 Cmu-Chr10:31599785 2.50E-07 dispersed
Cmu08g1475 Cmu-Chr8:26753726 Cmu10g2495 Cmu-Chr10:31599785 1.60E-26 dispersed
Cmu10g2495 Cmu-Chr10:31599785 Cmu11g1805 Cmu-Chr11:30180176 3.90E-21 dispersed
Cmu10g2033 Cmu-Chr10:26115135 Cmu10g2495 Cmu-Chr10:31599785 9.30E-34 transposed
Cmu01g2244 Cmu-Chr1:34813778 Cmu10g2495 Cmu-Chr10:31599785 6.70E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2495 K10666 - csv:101220497 783.867