Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2496 ATGGAGTTGGGTTTGAGCCTTGGAGATCATCCTCCTTCCAATTCCAATAAACCATTTGGGTTTCTCTCTAAACCGCTTTCTTCTTCTTCTTCTTCATCCCTCATGGCTTTGGGATTTTGTGTTGGTTTAATTGGACATCATTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCCGCTTCCGCTTCCCTTCAAGATGATGAAGAAGATGATGAAGATGATGATAATGATCAGAAAACGGTTCTTCTCGGTTCAGCTTCCGGTTCGGATCCACCGGTTCAGCTCGATCTTCTTCCTTTGGCTCCTGTTCCTCGCTCTTCTTCTTCCTCCCTTCCTTTTCCATGGCTTTCTCATCACTTGATGGCGGAAGTGGGTAGTTCAGAGGGAGGAGAAAGGGTAGAGTTGGATGTGAACCGGGCGGCGGAGACAGAAGACAGTAGGGTGTCGTGTTTCCAAATGGAATTTGGGGCGAGAAATGGCGGCGGAATTAAAAGGAAGAGATCATGGGAAATGGAAATGGAAACAGAAAGAGGAGGTTGTTCAAGAATGAGTGATGATGATCAAGATCATAATGCCTCTGCTGCTGCTCCTAAAAAGCTTCGACTTTCAAAACAACAATCTGCCTTTCTTGAAGAAAGCTTCAAAGAACATACCACCCTCAATCCTAAGCAGAAGCTAGCACTAGCCAAGCAGCTAAACCTCCAACCTAGGCAAGTGGAAGTATGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGTTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAAGAACTTCAAGAATTAAGAGCTTTAAAAACTTCTCAGCCCTTTTATATGCAACTTCCAGCCACCACCCTCACCATGTGCCCCTCGTGCGAGCGCGTCGCCGCCACCACCACCACCACCGCCTCTGTTCCCACCAAAACCGCCACCCCCGCCCCGTCGTCCGCTCTTTGCCTCGCCAATAAACCGAAGATCTTGCCATTTCCTCATTTACATCAGGCTGCTTCATGA 1056 46.69 MELGLSLGDHPPSNSNKPFGFLSKPLSSSSSSSLMALGFCVGLIGHHSASASASASASASASLQDDEEDDEDDDNDQKTVLLGSASGSDPPVQLDLLPLAPVPRSSSSSLPFPWLSHHLMAEVGSSEGGERVELDVNRAAETEDSRVSCFQMEFGARNGGGIKRKRSWEMEMETERGGCSRMSDDDQDHNASAAAPKKLRLSKQQSAFLEESFKEHTTLNPKQKLALAKQLNLQPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVAATTTTTASVPTKTATPAPSSALCLANKPKILPFPHLHQAAS 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31622757 31624772 + CmPI595203_10g024960.1 Cmu10g2496 428026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2496 351 MobiDBLite consensus disorder prediction 1 31 - -
Cmu10g2496 351 MobiDBLite consensus disorder prediction 177 199 - -
Cmu10g2496 351 Gene3D - 200 250 - -
Cmu10g2496 351 MobiDBLite consensus disorder prediction 54 99 - -
Cmu10g2496 351 ProSiteProfiles 'Homeobox' domain profile. 192 252 IPR001356 GO:0003677(InterPro)
Cmu10g2496 351 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 69 323 IPR050762 -
Cmu10g2496 351 CDD homeodomain 197 253 IPR001356 GO:0003677(InterPro)
Cmu10g2496 351 Coils Coil 258 288 - -
Cmu10g2496 351 MobiDBLite consensus disorder prediction 177 193 - -
Cmu10g2496 351 Pfam Homeodomain 198 250 IPR001356 GO:0003677(InterPro)
Cmu10g2496 351 Pfam Homeobox associated leucine zipper 252 286 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g2496 351 FunFam Homeobox-leucine zipper protein HAT22 200 246 - -
Cmu10g2496 351 SUPERFAMILY Homeodomain-like 189 253 IPR009057 -
Cmu10g2496 351 SMART HOX_1 194 256 IPR001356 GO:0003677(InterPro)
Cmu10g2496 351 ProSitePatterns 'Homeobox' domain signature. 227 250 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu10g2496 351 CDD bZIP 245 284 - -
Cmu10g2496 351 SMART halz 252 295 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g2496 351 MobiDBLite consensus disorder prediction 9 31 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0686 Cmu-Chr7:12646462 Cmu10g2496 Cmu-Chr10:31622757 1.20E-33 dispersed
Cmu10g1087 Cmu-Chr10:3100103 Cmu10g2496 Cmu-Chr10:31622757 1.70E-49 dispersed
Cmu10g1637 Cmu-Chr10:16923987 Cmu10g2496 Cmu-Chr10:31622757 2.00E-50 dispersed
Cmu10g2032 Cmu-Chr10:26100208 Cmu10g2496 Cmu-Chr10:31622757 2.70E-44 dispersed
Cmu10g2496 Cmu-Chr10:31622757 Cmu10g2673 Cmu-Chr10:33529430 2.40E-13 dispersed
Cmu05g0042 Cmu-Chr5:526756 Cmu10g2496 Cmu-Chr10:31622757 5.10E-49 transposed
Cmu05g1805 Cmu-Chr5:28161624 Cmu10g2496 Cmu-Chr10:31622757 3.20E-42 transposed
Cmu10g2496 Cmu-Chr10:31622757 Cmu09g0364 Cmu-Chr9:3512101 3.20E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7040 PF00046 Homeodomain 2.30E-15 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2496 K09338 - csv:101222778 458.759