Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2549 ATGAACACCTCCACTGACTCTGATGGCGGAGACGGCGGCAGCGTCGGAAGTTTCCCCTACGTCGTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCGCGACCTATTTCTGCACCAGAACCACCGTTCCGTCGCCGAATCGCCGTCTCCGGCCGGCGGAACAGCGGGATTTCGTCGTCGAGTTTGGACCGGGGCTTGAAGATGAGGTCATTAATGGGTATCCGAAGATTCTGTACTCGGAGGTGAAATTGGAGGGAAAATTGGAGTCCGCCGCCGCGAGGGGTTGTTCGATATGTTTGGGGGATTATAAAAACGACGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACAGCGGTTGTATTGATCCGTGGTTGCGGATGAACCCTAGCTGCCCTGTTTGCAGAACTTCGCCGGTGCCGACGCCGATTTCAACCCCTTTGGCGGAGACGGTTCCGTTGGCCATCGGAAGGAGTTGA 498 55.22 MNTSTDSDGGDGGSVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPSPNRRLRPAEQRDFVVEFGPGLEDEVINGYPKILYSEVKLEGKLESAAARGCSICLGDYKNDDVLRLLPDCGHLFHSGCIDPWLRMNPSCPVCRTSPVPTPISTPLAETVPLAIGRS 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32221308 32221805 - CmPI595203_10g025490.1 Cmu10g2549 428079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2549 165 SMART ring_2 100 141 IPR001841 -
Cmu10g2549 165 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 159 IPR045899 -
Cmu10g2549 165 Pfam Ring finger domain 100 142 IPR001841 -
Cmu10g2549 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 147 IPR013083 -
Cmu10g2549 165 CDD RING-H2_PA-TM-RING 100 142 - -
Cmu10g2549 165 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Cmu10g2549 165 SUPERFAMILY RING/U-box 74 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1462 Cmu-Chr1:28161721 Cmu10g2549 Cmu-Chr10:32221308 2.20E-44 dispersed
Cmu08g0756 Cmu-Chr8:19870768 Cmu10g2549 Cmu-Chr10:32221308 1.00E-14 dispersed
Cmu08g1011 Cmu-Chr8:22352225 Cmu10g2549 Cmu-Chr10:32221308 2.40E-25 dispersed
Cmu10g2397 Cmu-Chr10:30423349 Cmu10g2549 Cmu-Chr10:32221308 3.30E-07 dispersed
Cmu10g2549 Cmu-Chr10:32221308 Cmu11g0682 Cmu-Chr11:7512760 4.20E-08 dispersed
Cmu10g2549 Cmu-Chr10:32221308 Cmu07g1486 Cmu-Chr7:30021457 2.20E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2549 - - - 0.0