Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu10g2554 | ATGAACGATTTATTCTCCTCTCGATCCTTTTCCCGCGACACCCATGTCGTTGAAATGGGCAACGCTTCCTCTTCCCCTACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAATCTGTTAAAGACGAGCTCAAGGAGCTTGAGCGACTCTACACTAACCTCCGTGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCCGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCTCTTGCTCTCAAGAAGGCCAAGCTCATTAAAGTCCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAACCGGAGTCTCCCTGGTTGCGGTCCCGGTTCCTCTTCTGACCGGACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAATTGCAGGACTCTATGGAGAGTTTCAATAATCTCAGGCAACAGATCTCCTCTGAGTACCGGGAGACCGTTCAGCGAAGATATTACACGGTTACTGGGGAAAATCCGGACGAGAAGACCATTGATGTACTGATATCTACAGGTGAAAGTGAGACATTTTTGCAGAAAGCCATTCAAGAACAAGGTAGAGGCAGAATTCTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAGGAACCTCAAAGAGCTGCACCAGGTTTTCTTGGACATGGCAGTCTTGGTGCATGAGCAAGGCGAGAAACTTGACGACATCGAAAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGCGGCACGCAGGAGTTGACAACAGCTAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTGTGCTGCTCATTGTCATGGTGATTGTCCTCAGCCTGCAGCCTTGGAAGAAAAACAACAGTGGACCCTAA | 909 | 47.96 | MNDLFSSRSFSRDTHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELERLYTNLRDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFLDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIIVLLIVMVIVLSLQPWKKNNSGP | 302 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 32279926 | 32281567 | - | CmPI595203_10g025540.1 | Cmu10g2554 | 428084 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu10g2554 | 302 | SMART | SynN_4 | 26 | 152 | IPR006011 | GO:0016020(InterPro) | |
Cmu10g2554 | 302 | Pfam | Syntaxin | 33 | 236 | IPR006011 | GO:0016020(InterPro) | |
Cmu10g2554 | 302 | FunFam | Syntaxin 132 | 194 | 293 | - | - | |
Cmu10g2554 | 302 | CDD | SNARE_syntaxin1-like | 200 | 262 | - | - | |
Cmu10g2554 | 302 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 28 | 158 | - | - | |
Cmu10g2554 | 302 | SMART | tSNARE_6 | 196 | 263 | IPR000727 | - | |
Cmu10g2554 | 302 | Gene3D | - | 197 | 293 | - | - | |
Cmu10g2554 | 302 | Pfam | SNARE domain | 237 | 289 | IPR000727 | - | |
Cmu10g2554 | 302 | ProSitePatterns | Syntaxin / epimorphin family signature. | 207 | 246 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cmu10g2554 | 302 | SUPERFAMILY | t-snare proteins | 30 | 256 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cmu10g2554 | 302 | CDD | SynN | 31 | 188 | IPR006011 | GO:0016020(InterPro) | |
Cmu10g2554 | 302 | Gene3D | - | 29 | 161 | - | - | |
Cmu10g2554 | 302 | PANTHER | SYNTAXIN | 33 | 280 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cmu10g2554 | 302 | Coils | Coil | 126 | 150 | - | - | |
Cmu10g2554 | 302 | Coils | Coil | 204 | 224 | - | - | |
Cmu10g2554 | 302 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 201 | 263 | IPR000727 | - | |
Cmu10g2554 | 302 | Coils | Coil | 31 | 65 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g1461 | Cmu-Chr1:28156998 | Cmu10g2554 | Cmu-Chr10:32279926 | 1.70E-111 | dispersed | |
Cmu03g1156 | Cmu-Chr3:5977029 | Cmu10g2554 | Cmu-Chr10:32279926 | 5.60E-91 | dispersed | |
Cmu04g0567 | Cmu-Chr4:19104732 | Cmu10g2554 | Cmu-Chr10:32279926 | 7.50E-59 | dispersed | |
Cmu10g2115 | Cmu-Chr10:27095346 | Cmu10g2554 | Cmu-Chr10:32279926 | 1.50E-65 | dispersed | |
Cmu10g2554 | Cmu-Chr10:32279926 | Cmu01g1899 | Cmu-Chr1:32461583 | 1.30E-47 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu10g2554 | K08486 | - | csv:101208931 | 552.747 |