Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2554 ATGAACGATTTATTCTCCTCTCGATCCTTTTCCCGCGACACCCATGTCGTTGAAATGGGCAACGCTTCCTCTTCCCCTACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAATCTGTTAAAGACGAGCTCAAGGAGCTTGAGCGACTCTACACTAACCTCCGTGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCCGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCTCTTGCTCTCAAGAAGGCCAAGCTCATTAAAGTCCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAACCGGAGTCTCCCTGGTTGCGGTCCCGGTTCCTCTTCTGACCGGACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAATTGCAGGACTCTATGGAGAGTTTCAATAATCTCAGGCAACAGATCTCCTCTGAGTACCGGGAGACCGTTCAGCGAAGATATTACACGGTTACTGGGGAAAATCCGGACGAGAAGACCATTGATGTACTGATATCTACAGGTGAAAGTGAGACATTTTTGCAGAAAGCCATTCAAGAACAAGGTAGAGGCAGAATTCTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAGGAACCTCAAAGAGCTGCACCAGGTTTTCTTGGACATGGCAGTCTTGGTGCATGAGCAAGGCGAGAAACTTGACGACATCGAAAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGCGGCACGCAGGAGTTGACAACAGCTAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTGTGCTGCTCATTGTCATGGTGATTGTCCTCAGCCTGCAGCCTTGGAAGAAAAACAACAGTGGACCCTAA 909 47.96 MNDLFSSRSFSRDTHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELERLYTNLRDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFLDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIIVLLIVMVIVLSLQPWKKNNSGP 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32279926 32281567 - CmPI595203_10g025540.1 Cmu10g2554 428084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2554 302 SMART SynN_4 26 152 IPR006011 GO:0016020(InterPro)
Cmu10g2554 302 Pfam Syntaxin 33 236 IPR006011 GO:0016020(InterPro)
Cmu10g2554 302 FunFam Syntaxin 132 194 293 - -
Cmu10g2554 302 CDD SNARE_syntaxin1-like 200 262 - -
Cmu10g2554 302 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 28 158 - -
Cmu10g2554 302 SMART tSNARE_6 196 263 IPR000727 -
Cmu10g2554 302 Gene3D - 197 293 - -
Cmu10g2554 302 Pfam SNARE domain 237 289 IPR000727 -
Cmu10g2554 302 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cmu10g2554 302 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cmu10g2554 302 CDD SynN 31 188 IPR006011 GO:0016020(InterPro)
Cmu10g2554 302 Gene3D - 29 161 - -
Cmu10g2554 302 PANTHER SYNTAXIN 33 280 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cmu10g2554 302 Coils Coil 126 150 - -
Cmu10g2554 302 Coils Coil 204 224 - -
Cmu10g2554 302 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Cmu10g2554 302 Coils Coil 31 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1461 Cmu-Chr1:28156998 Cmu10g2554 Cmu-Chr10:32279926 1.70E-111 dispersed
Cmu03g1156 Cmu-Chr3:5977029 Cmu10g2554 Cmu-Chr10:32279926 5.60E-91 dispersed
Cmu04g0567 Cmu-Chr4:19104732 Cmu10g2554 Cmu-Chr10:32279926 7.50E-59 dispersed
Cmu10g2115 Cmu-Chr10:27095346 Cmu10g2554 Cmu-Chr10:32279926 1.50E-65 dispersed
Cmu10g2554 Cmu-Chr10:32279926 Cmu01g1899 Cmu-Chr1:32461583 1.30E-47 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2554 K08486 - csv:101208931 552.747