Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2558 ATGGAAGATGAAATCGAAATCCCCCATTATTTCCTCTGCCCCATCTCCCTCCAAATCATGAAAGACCCTGTAACTCTCCCCTCCGGCATAACCTACGACCGCCACTCCATTGAAACTTGGCTCTTCTCCAACAAAAACTCCTCCTGCCCCGTCACCAAACTCCCCATCTCCGACTCCGATTCCGATCTCCTCACCCCTAACCACACCCTCCGCCGTCTAATCCAAGCTTGGTGTACTTTAAACTCCTCCCATGGCGTCGAACGCTTCCCCACTCCCAAACCCCCCATCCATAAATCCCAAATCCTTCACCTCATTTCCTCTGCCAATACTTCCCCTTCTTCCTTAATCTCCTCCATCCGCCGTCTCCGCTCCATATCCGCCGACTCTGAAACTAATCGCCGTTGTGTTGAATCCGCCGGAGCGCCAGAGTTTTTAGCCTCTGTTATTGTCGGCACCGACTCCTCTGCCTCTCATGAAGCTGTCTCTACTCTCCATTATCTCCGTCTCTCCGATTCAACATTCAAATCCTTGGCTACCCATTCCGAGTTTCTCGATTCTTTGACGAATTTCATGAAATTACAAGGTACCCATGAATCGTCGAGAGCTTATGCGGTGTTGATTTTGAAATCGATCTTCGAAGTCGCTGACCCACTTCAACTAAGTTTCTTGAAATCCGATTTGTTTGTGCGGATTGTTGAGATTTTGAAGGATCGATCATCGTCTCAGCAGATTCTCAAGGCGGCATTGGGGATTTTGATTGCGGCGTGTCCATGGGGGAGGAACAGAGTGAAGGCAGTGGAGGCAGGTGGGGTTGGGGTTTTGGTTGAGATTTTACTAGCGACGCCGGAAAGGAGGGTATGTGAGATGACGTTGACGGCAATGGATTTATTCTGTGGGTGTGCGGATGGCAGGGCGGCGCTGCTGGCACACGGCGGAGGTATGGCCGTTGTTTCGAAGAAGATACTGAGAGTGTCGCAAGTGGGGAGTGAAAAGGCGGTGAGGGTTCTGTATTGGGTGGCGAAATTCTCGGGAAGTCCGGCGGTTTTGATGGAAATGGCGCAATTAGGGATTGTGGCGAAGCTTTGTTTGGTTCTGCAAATTGAAAGTGGAAGCAAGACGAAGGAGAAAGCTAGAGAGATTTTGAAAATGCATGCTCGTGTTTGGAAGAATTCGCCGTGTATTCCTTCTAAATTGGCTTCTTCATATCCTCCAAATTAA 1218 49.59 MEDEIEIPHYFLCPISLQIMKDPVTLPSGITYDRHSIETWLFSNKNSSCPVTKLPISDSDSDLLTPNHTLRRLIQAWCTLNSSHGVERFPTPKPPIHKSQILHLISSANTSPSSLISSIRRLRSISADSETNRRCVESAGAPEFLASVIVGTDSSASHEAVSTLHYLRLSDSTFKSLATHSEFLDSLTNFMKLQGTHESSRAYAVLILKSIFEVADPLQLSFLKSDLFVRIVEILKDRSSSQQILKAALGILIAACPWGRNRVKAVEAGGVGVLVEILLATPERRVCEMTLTAMDLFCGCADGRAALLAHGGGMAVVSKKILRVSQVGSEKAVRVLYWVAKFSGSPAVLMEMAQLGIVAKLCLVLQIESGSKTKEKAREILKMHARVWKNSPCIPSKLASSYPPN 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32371144 32372361 - CmPI595203_10g025580.1 Cmu10g2558 428088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2558 405 SMART Ubox_2 10 77 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu10g2558 405 Pfam U-box domain 7 81 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu10g2558 405 SUPERFAMILY ARM repeat 101 371 IPR016024 -
Cmu10g2558 405 Gene3D - 96 390 IPR011989 -
Cmu10g2558 405 SUPERFAMILY RING/U-box 4 85 - -
Cmu10g2558 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Cmu10g2558 405 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu10g2558 405 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630(InterPro)
Cmu10g2558 405 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Cmu10g2558 405 CDD RING-Ubox_PUB 8 60 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1829 Cmu-Chr3:24326763 Cmu10g2558 Cmu-Chr10:32371144 7.10E-73 dispersed
Cmu03g1835 Cmu-Chr3:24558339 Cmu10g2558 Cmu-Chr10:32371144 5.50E-78 dispersed
Cmu05g0288 Cmu-Chr5:2430730 Cmu10g2558 Cmu-Chr10:32371144 2.40E-52 dispersed
Cmu06g0069 Cmu-Chr6:654512 Cmu10g2558 Cmu-Chr10:32371144 1.80E-37 dispersed
Cmu08g0880 Cmu-Chr8:21056967 Cmu10g2558 Cmu-Chr10:32371144 8.20E-13 dispersed
Cmu10g2558 Cmu-Chr10:32371144 Cmu11g1389 Cmu-Chr11:26082089 5.80E-11 dispersed
Cmu04g0557 Cmu-Chr4:18983406 Cmu10g2558 Cmu-Chr10:32371144 7.00E-116 transposed
Cmu05g1118 Cmu-Chr5:10625633 Cmu10g2558 Cmu-Chr10:32371144 4.40E-49 transposed
Cmu05g1223 Cmu-Chr5:12705638 Cmu10g2558 Cmu-Chr10:32371144 3.20E-42 transposed
Cmu07g0601 Cmu-Chr7:7815671 Cmu10g2558 Cmu-Chr10:32371144 2.40E-45 transposed
Cmu11g0882 Cmu-Chr11:11698348 Cmu10g2558 Cmu-Chr10:32371144 2.00E-24 transposed
Cmu07g0262 Cmu-Chr7:2567190 Cmu10g2558 Cmu-Chr10:32371144 3.00E-06 transposed
Cmu10g2558 Cmu-Chr10:32371144 Cmu02g2228 Cmu-Chr2:35861198 1.40E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2558 - - - 0.0