Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2558 ATGGAAGATGAAATCGAAATCCCCCATTATTTCCTCTGCCCCATCTCCCTCCAAATCATGAAAGACCCTGTAACTCTCCCCTCCGGCATAACCTACGACCGCCACTCCATTGAAACTTGGCTCTTCTCCAACAAAAACTCCTCCTGCCCCGTCACCAAACTCCCCATCTCCGACTCCGATTCCGATCTCCTCACCCCTAACCACACCCTCCGCCGTCTAATCCAAGCTTGGTGTACTTTAAACTCCTCCCATGGCGTCGAACGCTTCCCCACTCCCAAACCCCCCATCCATAAATCCCAAATCCTTCACCTCATTTCCTCTGCCAATACTTCCCCTTCTTCCTTAATCTCCTCCATCCGCCGTCTCCGCTCCATATCCGCCGACTCTGAAACTAATCGCCGTTGTGTTGAATCCGCCGGAGCGCCAGAGTTTTTAGCCTCTGTTATTGTCGGCACCGACTCCTCTGCCTCTCATGAAGCTGTCTCTACTCTCCATTATCTCCGTCTCTCCGATTCAACATTCAAATCCTTGGCTACCCATTCCGAGTTTCTCGATTCTTTGACGAATTTCATGAAATTACAAGGTACCCATGAATCGTCGAGAGCTTATGCGGTGTTGATTTTGAAATCGATCTTCGAAGTCGCTGACCCACTTCAACTAAGTTTCTTGAAATCCGATTTGTTTGTGCGGATTGTTGAGATTTTGAAGGATCGATCATCGTCTCAGCAGATTCTCAAGGCGGCATTGGGGATTTTGATTGCGGCGTGTCCATGGGGGAGGAACAGAGTGAAGGCAGTGGAGGCAGGTGGGGTTGGGGTTTTGGTTGAGATTTTACTAGCGACGCCGGAAAGGAGGGTATGTGAGATGACGTTGACGGCAATGGATTTATTCTGTGGGTGTGCGGATGGCAGGGCGGCGCTGCTGGCACACGGCGGAGGTATGGCCGTTGTTTCGAAGAAGATACTGAGAGTGTCGCAAGTGGGGAGTGAAAAGGCGGTGAGGGTTCTGTATTGGGTGGCGAAATTCTCGGGAAGTCCGGCGGTTTTGATGGAAATGGCGCAATTAGGGATTGTGGCGAAGCTTTGTTTGGTTCTGCAAATTGAAAGTGGAAGCAAGACGAAGGAGAAAGCTAGAGAGATTTTGAAAATGCATGCTCGTGTTTGGAAGAATTCGCCGTGTATTCCTTCTAAATTGGCTTCTTCATATCCTCCAAATTAA 1218 49.59 MEDEIEIPHYFLCPISLQIMKDPVTLPSGITYDRHSIETWLFSNKNSSCPVTKLPISDSDSDLLTPNHTLRRLIQAWCTLNSSHGVERFPTPKPPIHKSQILHLISSANTSPSSLISSIRRLRSISADSETNRRCVESAGAPEFLASVIVGTDSSASHEAVSTLHYLRLSDSTFKSLATHSEFLDSLTNFMKLQGTHESSRAYAVLILKSIFEVADPLQLSFLKSDLFVRIVEILKDRSSSQQILKAALGILIAACPWGRNRVKAVEAGGVGVLVEILLATPERRVCEMTLTAMDLFCGCADGRAALLAHGGGMAVVSKKILRVSQVGSEKAVRVLYWVAKFSGSPAVLMEMAQLGIVAKLCLVLQIESGSKTKEKAREILKMHARVWKNSPCIPSKLASSYPPN 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32371144 32372361 - CmPI595203_10g025580.1 Cmu10g2558 428088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2558 405 SMART Ubox_2 10 77 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu10g2558 405 Pfam U-box domain 7 81 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu10g2558 405 SUPERFAMILY ARM repeat 101 371 IPR016024 -
Cmu10g2558 405 Gene3D - 96 390 IPR011989 -
Cmu10g2558 405 SUPERFAMILY RING/U-box 4 85 - -
Cmu10g2558 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Cmu10g2558 405 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu10g2558 405 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630(InterPro)
Cmu10g2558 405 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Cmu10g2558 405 CDD RING-Ubox_PUB 8 60 IPR045210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2558 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1829 Cmu-Chr3:24326763 Cmu10g2558 Cmu-Chr10:32371144 7.10E-73 dispersed
Cmu03g1835 Cmu-Chr3:24558339 Cmu10g2558 Cmu-Chr10:32371144 5.50E-78 dispersed
Cmu05g0288 Cmu-Chr5:2430730 Cmu10g2558 Cmu-Chr10:32371144 2.40E-52 dispersed
Cmu06g0069 Cmu-Chr6:654512 Cmu10g2558 Cmu-Chr10:32371144 1.80E-37 dispersed
Cmu08g0880 Cmu-Chr8:21056967 Cmu10g2558 Cmu-Chr10:32371144 8.20E-13 dispersed
Cmu10g2558 Cmu-Chr10:32371144 Cmu11g1389 Cmu-Chr11:26082089 5.80E-11 dispersed
Cmu04g0557 Cmu-Chr4:18983406 Cmu10g2558 Cmu-Chr10:32371144 7.00E-116 transposed
Cmu05g1118 Cmu-Chr5:10625633 Cmu10g2558 Cmu-Chr10:32371144 4.40E-49 transposed
Cmu05g1223 Cmu-Chr5:12705638 Cmu10g2558 Cmu-Chr10:32371144 3.20E-42 transposed
Cmu07g0601 Cmu-Chr7:7815671 Cmu10g2558 Cmu-Chr10:32371144 2.40E-45 transposed
Cmu11g0882 Cmu-Chr11:11698348 Cmu10g2558 Cmu-Chr10:32371144 2.00E-24 transposed
Cmu07g0262 Cmu-Chr7:2567190 Cmu10g2558 Cmu-Chr10:32371144 3.00E-06 transposed
Cmu10g2558 Cmu-Chr10:32371144 Cmu02g2228 Cmu-Chr2:35861198 1.40E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g235 . . . . Bpe04g01488 . Bma04g01537 . . . . . . . . . Cpe08g00965 . . . . . . . . . . . . . . . . . . . . . Cme04g02322 . . Bda03g01627 Bda05g01129 . . . . . . . . . . . . . . . . . . . . Cla10g01740 Cam10g1792 Cec10g1844 Cco10g1817 Clacu10g1808 Cmu10g2558 Cre10g1945 Lsi03g01816 . Chy04g01856 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g2293 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Cmu02g1246 . 213 857 U-box Gene Family AT2G23140 66.5 1.2e-124 444.1
Cmu08g1658 . 1 780 U-box Gene Family AT1G24330 59.5 3.6e-243 838.2
Cmu11g1389 . 1 755 U-box Gene Family AT1G24330 58.3 3.5e-230 795.0
Cmu08g1658 . 1 779 U-box Gene Family AT1G67530 59.3 4.4e-241 831.2
Cmu11g1389 . 1 756 U-box Gene Family AT1G67530 57.3 3.1e-226 781.9
Cmu01g2188 . 1 362 U-box Gene Family AT4G21350 62.1 2.4e-120 429.1
Cmu07g0263 . 135 460 U-box Gene Family AT3G07360 55.3 3.9e-82 302.0
Cmu07g0660 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cmu01g0588 . 1073 1272 U-box Gene Family AT1G71020 55.9 3.0e-54 209.9
Cmu03g0778 . 281 450 U-box Gene Family AT1G71020 57.8 9.3e-48 188.3
Cmu05g2175 . 249 414 U-box Gene Family AT1G71020 57.4 6.0e-47 185.7
Cmu02g2020 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cmu07g0660 . 16 656 U-box Gene Family AT1G23030 56.6 6.4e-110 395.2
Cmu01g0588 . 859 1462 U-box Gene Family AT1G23030 52.4 8.4e-86 315.1
Cmu03g0778 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Cmu02g2020 . 93 635 U-box Gene Family AT2G28830 50.8 1.3e-99 360.9
Cmu03g0778 . 24 689 U-box Gene Family AT3G46510 68.2 3.5e-170 595.5
Cmu02g2020 . 3 638 U-box Gene Family AT3G46510 66.3 5.7e-157 551.6
Cmu05g2175 . 16 623 U-box Gene Family AT3G46510 58.6 5.1e-121 432.2
Cmu02g0992 . 36 640 U-box Gene Family AT3G46510 50.2 6.2e-87 318.9
Cmu05g2175 . 12 625 U-box Gene Family AT3G54850 68.3 8.7e-163 570.9
Cmu02g2020 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cmu03g0778 . 31 650 U-box Gene Family AT3G54850 55.9 1.9e-104 377.1
Cmu02g0992 . 92 644 U-box Gene Family AT5G42340 64.2 7.3e-128 454.9
Cmu04g0693 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cmu03g1336 . 1 713 U-box Gene Family AT1G29340 67.9 1.5e-246 849.4
Cmu05g1223 . 27 403 U-box Gene Family AT5G37490 52.1 1.5e-100 363.6
Cmu04g0557 . 4 422 U-box Gene Family AT3G52450 52.4 3.1e-119 425.6
Cmu10g2558 . 1 403 U-box Gene Family AT3G52450 50.7 2.3e-114 409.5
Cmu10g2558 . 1 403 U-box Gene Family AT2G35930 55.6 4.6e-120 428.3
Cmu04g0557 . 7 422 U-box Gene Family AT2G35930 51.4 3.6e-117 418.7
Cmu05g1118 . 9 426 U-box Gene Family AT3G19380 64.1 3.4e-147 518.5
Cmu05g1118 . 1 426 U-box Gene Family AT1G49780 64.3 1.0e-151 533.5
Cmu01g1508 . 1 407 U-box Gene Family AT5G64660 54.2 2.5e-121 432.6
Cmu01g1508 . 1 407 U-box Gene Family AT5G09800 51.3 6.4e-106 381.3
Cmu08g1602 . 1 454 U-box Gene Family AT3G49810 63.0 3.1e-154 542.0
Cmu05g2712 . 1 454 U-box Gene Family AT3G49810 62.6 2.0e-153 539.3
Cmu08g1602 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Cmu05g2712 . 1 454 U-box Gene Family AT5G65920 61.3 2.8e-147 518.8
Cmu05g0168 . 61 932 U-box Gene Family AT2G45910 52.9 2.5e-234 808.9
Cmu01g0448 . 65 841 U-box Gene Family AT4G25160 51.7 3.3e-218 755.4
Cmu06g1719 . 1 478 U-box Gene Family AT5G65200 50.1 3.6e-88 322.8
Cmu09g1797 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Cmu06g1719 . 27 477 U-box Gene Family AT5G40140 51.5 2.1e-59 227.3
Cmu01g1377 . 29 498 U-box Gene Family AT5G40140 52.1 2.8e-56 216.9
Cmu08g0879 . 15 539 U-box Gene Family AT1G76390 64.1 5.5e-178 621.7
Cmu08g0880 . 26 311 U-box Gene Family AT1G76390 55.7 2.7e-84 310.5
Cmu08g0879 . 15 539 U-box Gene Family AT1G20780 63.7 4.0e-181 632.1
Cmu08g0880 . 35 311 U-box Gene Family AT1G20780 57.9 4.3e-90 329.7
Cmu08g1658 . 1 782 U-box Gene Family AT1G27910 62.5 2.7e-267 918.3
Cmu11g1389 . 1 767 U-box Gene Family AT1G27910 62.3 2.6e-262 901.7
Cmu01g1704 . 444 1035 U-box Gene Family AT5G67530 74.0 3.2e-260 894.4
Cmu10g2603 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cmu05g0231 . 775 905 U-box Gene Family AT5G67530 55.7 5.7e-39 159.5
Cmu05g0425 . 1 517 U-box Gene Family AT1G04510 74.4 5.3e-222 767.3
Cmu05g0425 . 1 486 U-box Gene Family AT2G33340 73.6 4.7e-209 724.2
Cmu07g0262 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
Cmu10g2293 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Cmu02g1246 . 213 857 U-box Gene Family AT2G23140 66.5 1.2e-124 444.1
Cmu08g1658 . 1 780 U-box Gene Family AT1G24330 59.5 3.6e-243 838.2
Cmu11g1389 . 1 755 U-box Gene Family AT1G24330 58.3 3.5e-230 795.0
Cmu08g1658 . 1 779 U-box Gene Family AT1G67530 59.3 4.4e-241 831.2
Cmu11g1389 . 1 756 U-box Gene Family AT1G67530 57.3 3.1e-226 781.9
Cmu01g2188 . 1 362 U-box Gene Family AT4G21350 62.1 2.4e-120 429.1
Cmu07g0263 . 135 460 U-box Gene Family AT3G07360 55.3 3.9e-82 302.0
Cmu07g0660 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cmu01g0588 . 1073 1272 U-box Gene Family AT1G71020 55.9 3.0e-54 209.9
Cmu03g0778 . 281 450 U-box Gene Family AT1G71020 57.8 9.3e-48 188.3
Cmu05g2175 . 249 414 U-box Gene Family AT1G71020 57.4 6.0e-47 185.7
Cmu02g2020 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cmu07g0660 . 16 656 U-box Gene Family AT1G23030 56.6 6.4e-110 395.2
Cmu01g0588 . 859 1462 U-box Gene Family AT1G23030 52.4 8.4e-86 315.1
Cmu03g0778 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Cmu02g2020 . 93 635 U-box Gene Family AT2G28830 50.8 1.3e-99 360.9
Cmu03g0778 . 24 689 U-box Gene Family AT3G46510 68.2 3.5e-170 595.5
Cmu02g2020 . 3 638 U-box Gene Family AT3G46510 66.3 5.7e-157 551.6
Cmu05g2175 . 16 623 U-box Gene Family AT3G46510 58.6 5.1e-121 432.2
Cmu02g0992 . 36 640 U-box Gene Family AT3G46510 50.2 6.2e-87 318.9
Cmu05g2175 . 12 625 U-box Gene Family AT3G54850 68.3 8.7e-163 570.9
Cmu02g2020 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cmu03g0778 . 31 650 U-box Gene Family AT3G54850 55.9 1.9e-104 377.1
Cmu02g0992 . 92 644 U-box Gene Family AT5G42340 64.2 7.3e-128 454.9
Cmu04g0693 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cmu03g1336 . 1 713 U-box Gene Family AT1G29340 67.9 1.5e-246 849.4
Cmu05g1223 . 27 403 U-box Gene Family AT5G37490 52.1 1.5e-100 363.6
Cmu04g0557 . 4 422 U-box Gene Family AT3G52450 52.4 3.1e-119 425.6
Cmu10g2558 . 1 403 U-box Gene Family AT3G52450 50.7 2.3e-114 409.5
Cmu10g2558 . 1 403 U-box Gene Family AT2G35930 55.6 4.6e-120 428.3
Cmu04g0557 . 7 422 U-box Gene Family AT2G35930 51.4 3.6e-117 418.7
Cmu05g1118 . 9 426 U-box Gene Family AT3G19380 64.1 3.4e-147 518.5
Cmu05g1118 . 1 426 U-box Gene Family AT1G49780 64.3 1.0e-151 533.5
Cmu01g1508 . 1 407 U-box Gene Family AT5G64660 54.2 2.5e-121 432.6
Cmu01g1508 . 1 407 U-box Gene Family AT5G09800 51.3 6.4e-106 381.3
Cmu08g1602 . 1 454 U-box Gene Family AT3G49810 63.0 3.1e-154 542.0
Cmu05g2712 . 1 454 U-box Gene Family AT3G49810 62.6 2.0e-153 539.3
Cmu08g1602 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Cmu05g2712 . 1 454 U-box Gene Family AT5G65920 61.3 2.8e-147 518.8
Cmu05g0168 . 61 932 U-box Gene Family AT2G45910 52.9 2.5e-234 808.9
Cmu01g0448 . 65 841 U-box Gene Family AT4G25160 51.7 3.3e-218 755.4
Cmu06g1719 . 1 478 U-box Gene Family AT5G65200 50.1 3.6e-88 322.8
Cmu09g1797 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Cmu06g1719 . 27 477 U-box Gene Family AT5G40140 51.5 2.1e-59 227.3
Cmu01g1377 . 29 498 U-box Gene Family AT5G40140 52.1 2.8e-56 216.9
Cmu08g0879 . 15 539 U-box Gene Family AT1G76390 64.1 5.5e-178 621.7
Cmu08g0880 . 26 311 U-box Gene Family AT1G76390 55.7 2.7e-84 310.5
Cmu08g0879 . 15 539 U-box Gene Family AT1G20780 63.7 4.0e-181 632.1
Cmu08g0880 . 35 311 U-box Gene Family AT1G20780 57.9 4.3e-90 329.7
Cmu08g1658 . 1 782 U-box Gene Family AT1G27910 62.5 2.7e-267 918.3
Cmu11g1389 . 1 767 U-box Gene Family AT1G27910 62.3 2.6e-262 901.7
Cmu01g1704 . 444 1035 U-box Gene Family AT5G67530 74.0 3.2e-260 894.4
Cmu10g2603 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cmu05g0231 . 775 905 U-box Gene Family AT5G67530 55.7 5.7e-39 159.5
Cmu05g0425 . 1 517 U-box Gene Family AT1G04510 74.4 5.3e-222 767.3
Cmu05g0425 . 1 486 U-box Gene Family AT2G33340 73.6 4.7e-209 724.2
Cmu07g0262 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001728 2 2 2 2 2 2 3 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 3 2 2 2 2 3 67