Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2559 ATGGCGACTTACCTTCATGGAAATTCTGATCAATTCCAATCTTCTGATGGTGGCCTTCAAACCCTTGTCTTAATGAATCCAAGCTATGTTCAATTCTCAGACACGCCGCCGCCGCCGCCTCCGTCCCACCCTAATCTCGTCTTCTTCAATTCTCCTTCTACGGCTGCTAATTCCTATACTACACTCACACAAGCGCCCCCGTCTTCTCACACTCAACAATTCGTTGGAATTCCGTTGCAGACGACTGCCGCTTCCCCGACGTCACAAGACCATAATTCGCATCCTTTGAATCCCCACCATGATATCTCTGCCTTGCACGGCTTTGCTCCACGCCTTCACCATAACATTTGGAACCAAATTGACCCATCCACGGCCGCGCGTGAGTCTGCACGTGCTCAGCAGGGCTTGTCCTTGAGCCTTTCTTCGCAGCACCAGCAAGGTTTTGGGTCGAGAGACGTTCAATCTCAGACCCAACAGGCGGCGTCTGGCGAGGAGAACATGCGGATCTCCGGTGGATCGAGTTCTTCGGCTTCTGGTGTCACTAACGGCGTTGCTGGAATTCAGGGCGTTTTAATTAGCTCCAAATATCTTAAGGCTGCGCAAGAACTTCTAGATGAGGTTGTTAATGTCACCCAAAACGGAATTAAAAGTGAATCATCTCCAAAGAAGGCCACCGGAAATCAATCGAAGATGATCGGAGATGCTCCCGCTGCCACCGAGAGACAAGAAGGAGAAACCGACGGTAAACGGGCCGCGGAGCTTACAACCACCGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTTATAAGCATGCTTGACGAGGTGGAGCAAAGGTACAGACAGTACCACCACCAGATGCAGATAGTGATATCCTCATTCGAGCAGGCGGCCGGAGCCGGTTCGGCGAGAACCTACACCGCCCTTGCACTTCAGACGATTTCGAAGCAATTCCGTTGCTTAAAAGACGCAATCACCGGCCAAATCCGAGCGGCGAACAAGAGTTTGGGTGAAGAAGAATGTATCGGAAGAAAAATGGAAGGTTCCCGGTTGAAATTCGTCGATAACCATCTCCGGCAACAACGAGCTCTGCAACAATTGGGCATGATCCAACACAATGCTTGGAGACCTCAGAGGGGCTTACCGGAGAGATCGGTATCGATTCTTCGGGCTTGGCTTTTCGAACACTTCCTCCATCCTTACCCTAAGGATTCAGATAAACACATGCTCGCTAAGCAAACAGGGCTCACCAGAAGCCAGGTTTCGAATTGGTTTATAAACGCGAGAGTTCGACTGTGGAAGCCAATGGTGGAAGAGATGTACATGGAGGAAATCAAAGAGCAAGAACAGAACGGCAGCGGATCGACACCGGCGACGGAAAAAAGCAACGACGATTCAGTTTCGAAATCCATAGCTCCACCACCAGAGACAAAAAGCCCCAATTCAAAACAAGAGGAAAAAAGCCCAAATCCAAACCAAAACGTGCATCCTTCAATCTCAATCTCAAATTCCTCCGGCGGAAATGTTCGAAACCCATCTGGATTTACACTCATCGGAGCCTCATCGGAGCTCGACGGAATCACACGAGGAAGCCCTAAAAAACAGAGAGGCCCAGAAATCCTTCATTCCTCAAATAACAACGTCCCTTTCATAAACATGGACATCAAACCCCGAGAAGAAGAAGAACATCAAAATCACAATCACAATCACAATCCCCATCATAATCATCATCTTCCAATGAAATTCGACGACGAGAGACAAAACAGAGATGGGTATTCATTTCTAGGCCAACCCCATTTCAACATCGGCGGATTCGCCCAATACCCAATCGGCGAAATCGCCAGATTCGACGCCGATCAGTTTACTCCAAGATTCTCCGGCAATAATGGTGTCTCTTTGACGTTAGGCCTTCCCCATTGTGAAAATCTCTCGTTAAACGCAGCTACCCACCAAAGCTTTCTCCCAAACCAGAGCATCCATTTAGGAAGAAGAACAGAAATTGGAAAACCCACTGATTTTTCCGCCATTAACGCCTCTACAGCTCATTCTTCCACTGCTTTTGAGACCATCAACATCCAAAATGGAAAAAGGTTCGCTGCTCAATTACTGCCAGACTTTGTGGCCTAA 2127 48.38 MATYLHGNSDQFQSSDGGLQTLVLMNPSYVQFSDTPPPPPPSHPNLVFFNSPSTAANSYTTLTQAPPSSHTQQFVGIPLQTTAASPTSQDHNSHPLNPHHDISALHGFAPRLHHNIWNQIDPSTAARESARAQQGLSLSLSSQHQQGFGSRDVQSQTQQAASGEENMRISGGSSSSASGVTNGVAGIQGVLISSKYLKAAQELLDEVVNVTQNGIKSESSPKKATGNQSKMIGDAPAATERQEGETDGKRAAELTTTERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGAGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEECIGRKMEGSRLKFVDNHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQEQNGSGSTPATEKSNDDSVSKSIAPPPETKSPNSKQEEKSPNPNQNVHPSISISNSSGGNVRNPSGFTLIGASSELDGITRGSPKKQRGPEILHSSNNNVPFINMDIKPREEEEHQNHNHNHNPHHNHHLPMKFDDERQNRDGYSFLGQPHFNIGGFAQYPIGEIARFDADQFTPRFSGNNGVSLTLGLPHCENLSLNAATHQSFLPNQSIHLGRRTEIGKPTDFSAINASTAHSSTAFETINIQNGKRFAAQLLPDFVA 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32387093 32389507 - CmPI595203_10g025590.1 Cmu10g2559 428089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2559 708 Coils Coil 259 279 - -
Cmu10g2559 708 Pfam Homeobox KN domain 392 431 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu10g2559 708 SUPERFAMILY Homeodomain-like 376 442 IPR009057 -
Cmu10g2559 708 MobiDBLite consensus disorder prediction 448 518 - -
Cmu10g2559 708 ProSiteProfiles 'Homeobox' domain profile. 372 435 IPR001356 GO:0003677(InterPro)
Cmu10g2559 708 SMART prehox3 185 327 IPR006563 -
Cmu10g2559 708 MobiDBLite consensus disorder prediction 124 179 - -
Cmu10g2559 708 MobiDBLite consensus disorder prediction 213 227 - -
Cmu10g2559 708 MobiDBLite consensus disorder prediction 446 550 - -
Cmu10g2559 708 MobiDBLite consensus disorder prediction 240 255 - -
Cmu10g2559 708 FunFam BEL1-like homeodomain protein 9 378 440 - -
Cmu10g2559 708 CDD homeodomain 375 436 IPR001356 GO:0003677(InterPro)
Cmu10g2559 708 SMART HOX_1 375 439 IPR001356 GO:0003677(InterPro)
Cmu10g2559 708 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 131 476 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu10g2559 708 Gene3D - 370 449 - -
Cmu10g2559 708 MobiDBLite consensus disorder prediction 213 255 - -
Cmu10g2559 708 Pfam Associated with HOX 191 326 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0813 Cmu-Chr4:22698418 Cmu10g2559 Cmu-Chr10:32387093 4.40E-47 dispersed
Cmu10g2559 Cmu-Chr10:32387093 Cmu10g2865 Cmu-Chr10:35069980 3.20E-49 dispersed
Cmu01g0234 Cmu-Chr1:2316473 Cmu10g2559 Cmu-Chr10:32387093 2.00E-68 transposed
Cmu02g2227 Cmu-Chr2:35854531 Cmu10g2559 Cmu-Chr10:32387093 2.40E-13 transposed
Cmu08g1632 Cmu-Chr8:28016359 Cmu10g2559 Cmu-Chr10:32387093 1.20E-43 transposed
Cmu09g0261 Cmu-Chr9:2639923 Cmu10g2559 Cmu-Chr10:32387093 2.40E-70 transposed
Cmu11g0411 Cmu-Chr11:4532079 Cmu10g2559 Cmu-Chr10:32387093 2.50E-83 transposed
Cmu10g2559 Cmu-Chr10:32387093 Cmu02g2226 Cmu-Chr2:35851762 1.30E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7047 PF07526 POX 1.70E-49 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2559 - - - 0.0