Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu10g2559 | ATGGCGACTTACCTTCATGGAAATTCTGATCAATTCCAATCTTCTGATGGTGGCCTTCAAACCCTTGTCTTAATGAATCCAAGCTATGTTCAATTCTCAGACACGCCGCCGCCGCCGCCTCCGTCCCACCCTAATCTCGTCTTCTTCAATTCTCCTTCTACGGCTGCTAATTCCTATACTACACTCACACAAGCGCCCCCGTCTTCTCACACTCAACAATTCGTTGGAATTCCGTTGCAGACGACTGCCGCTTCCCCGACGTCACAAGACCATAATTCGCATCCTTTGAATCCCCACCATGATATCTCTGCCTTGCACGGCTTTGCTCCACGCCTTCACCATAACATTTGGAACCAAATTGACCCATCCACGGCCGCGCGTGAGTCTGCACGTGCTCAGCAGGGCTTGTCCTTGAGCCTTTCTTCGCAGCACCAGCAAGGTTTTGGGTCGAGAGACGTTCAATCTCAGACCCAACAGGCGGCGTCTGGCGAGGAGAACATGCGGATCTCCGGTGGATCGAGTTCTTCGGCTTCTGGTGTCACTAACGGCGTTGCTGGAATTCAGGGCGTTTTAATTAGCTCCAAATATCTTAAGGCTGCGCAAGAACTTCTAGATGAGGTTGTTAATGTCACCCAAAACGGAATTAAAAGTGAATCATCTCCAAAGAAGGCCACCGGAAATCAATCGAAGATGATCGGAGATGCTCCCGCTGCCACCGAGAGACAAGAAGGAGAAACCGACGGTAAACGGGCCGCGGAGCTTACAACCACCGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTTATAAGCATGCTTGACGAGGTGGAGCAAAGGTACAGACAGTACCACCACCAGATGCAGATAGTGATATCCTCATTCGAGCAGGCGGCCGGAGCCGGTTCGGCGAGAACCTACACCGCCCTTGCACTTCAGACGATTTCGAAGCAATTCCGTTGCTTAAAAGACGCAATCACCGGCCAAATCCGAGCGGCGAACAAGAGTTTGGGTGAAGAAGAATGTATCGGAAGAAAAATGGAAGGTTCCCGGTTGAAATTCGTCGATAACCATCTCCGGCAACAACGAGCTCTGCAACAATTGGGCATGATCCAACACAATGCTTGGAGACCTCAGAGGGGCTTACCGGAGAGATCGGTATCGATTCTTCGGGCTTGGCTTTTCGAACACTTCCTCCATCCTTACCCTAAGGATTCAGATAAACACATGCTCGCTAAGCAAACAGGGCTCACCAGAAGCCAGGTTTCGAATTGGTTTATAAACGCGAGAGTTCGACTGTGGAAGCCAATGGTGGAAGAGATGTACATGGAGGAAATCAAAGAGCAAGAACAGAACGGCAGCGGATCGACACCGGCGACGGAAAAAAGCAACGACGATTCAGTTTCGAAATCCATAGCTCCACCACCAGAGACAAAAAGCCCCAATTCAAAACAAGAGGAAAAAAGCCCAAATCCAAACCAAAACGTGCATCCTTCAATCTCAATCTCAAATTCCTCCGGCGGAAATGTTCGAAACCCATCTGGATTTACACTCATCGGAGCCTCATCGGAGCTCGACGGAATCACACGAGGAAGCCCTAAAAAACAGAGAGGCCCAGAAATCCTTCATTCCTCAAATAACAACGTCCCTTTCATAAACATGGACATCAAACCCCGAGAAGAAGAAGAACATCAAAATCACAATCACAATCACAATCCCCATCATAATCATCATCTTCCAATGAAATTCGACGACGAGAGACAAAACAGAGATGGGTATTCATTTCTAGGCCAACCCCATTTCAACATCGGCGGATTCGCCCAATACCCAATCGGCGAAATCGCCAGATTCGACGCCGATCAGTTTACTCCAAGATTCTCCGGCAATAATGGTGTCTCTTTGACGTTAGGCCTTCCCCATTGTGAAAATCTCTCGTTAAACGCAGCTACCCACCAAAGCTTTCTCCCAAACCAGAGCATCCATTTAGGAAGAAGAACAGAAATTGGAAAACCCACTGATTTTTCCGCCATTAACGCCTCTACAGCTCATTCTTCCACTGCTTTTGAGACCATCAACATCCAAAATGGAAAAAGGTTCGCTGCTCAATTACTGCCAGACTTTGTGGCCTAA | 2127 | 48.38 | MATYLHGNSDQFQSSDGGLQTLVLMNPSYVQFSDTPPPPPPSHPNLVFFNSPSTAANSYTTLTQAPPSSHTQQFVGIPLQTTAASPTSQDHNSHPLNPHHDISALHGFAPRLHHNIWNQIDPSTAARESARAQQGLSLSLSSQHQQGFGSRDVQSQTQQAASGEENMRISGGSSSSASGVTNGVAGIQGVLISSKYLKAAQELLDEVVNVTQNGIKSESSPKKATGNQSKMIGDAPAATERQEGETDGKRAAELTTTERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGAGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEECIGRKMEGSRLKFVDNHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQEQNGSGSTPATEKSNDDSVSKSIAPPPETKSPNSKQEEKSPNPNQNVHPSISISNSSGGNVRNPSGFTLIGASSELDGITRGSPKKQRGPEILHSSNNNVPFINMDIKPREEEEHQNHNHNHNPHHNHHLPMKFDDERQNRDGYSFLGQPHFNIGGFAQYPIGEIARFDADQFTPRFSGNNGVSLTLGLPHCENLSLNAATHQSFLPNQSIHLGRRTEIGKPTDFSAINASTAHSSTAFETINIQNGKRFAAQLLPDFVA | 708 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 32387093 | 32389507 | - | CmPI595203_10g025590.1 | Cmu10g2559 | 428089 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu10g2559 | 708 | Coils | Coil | 259 | 279 | - | - | |
Cmu10g2559 | 708 | Pfam | Homeobox KN domain | 392 | 431 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cmu10g2559 | 708 | SUPERFAMILY | Homeodomain-like | 376 | 442 | IPR009057 | - | |
Cmu10g2559 | 708 | MobiDBLite | consensus disorder prediction | 448 | 518 | - | - | |
Cmu10g2559 | 708 | ProSiteProfiles | 'Homeobox' domain profile. | 372 | 435 | IPR001356 | GO:0003677(InterPro) | |
Cmu10g2559 | 708 | SMART | prehox3 | 185 | 327 | IPR006563 | - | |
Cmu10g2559 | 708 | MobiDBLite | consensus disorder prediction | 124 | 179 | - | - | |
Cmu10g2559 | 708 | MobiDBLite | consensus disorder prediction | 213 | 227 | - | - | |
Cmu10g2559 | 708 | MobiDBLite | consensus disorder prediction | 446 | 550 | - | - | |
Cmu10g2559 | 708 | MobiDBLite | consensus disorder prediction | 240 | 255 | - | - | |
Cmu10g2559 | 708 | FunFam | BEL1-like homeodomain protein 9 | 378 | 440 | - | - | |
Cmu10g2559 | 708 | CDD | homeodomain | 375 | 436 | IPR001356 | GO:0003677(InterPro) | |
Cmu10g2559 | 708 | SMART | HOX_1 | 375 | 439 | IPR001356 | GO:0003677(InterPro) | |
Cmu10g2559 | 708 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 131 | 476 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cmu10g2559 | 708 | Gene3D | - | 370 | 449 | - | - | |
Cmu10g2559 | 708 | MobiDBLite | consensus disorder prediction | 213 | 255 | - | - | |
Cmu10g2559 | 708 | Pfam | Associated with HOX | 191 | 326 | IPR006563 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu04g0813 | Cmu-Chr4:22698418 | Cmu10g2559 | Cmu-Chr10:32387093 | 4.40E-47 | dispersed | |
Cmu10g2559 | Cmu-Chr10:32387093 | Cmu10g2865 | Cmu-Chr10:35069980 | 3.20E-49 | dispersed | |
Cmu01g0234 | Cmu-Chr1:2316473 | Cmu10g2559 | Cmu-Chr10:32387093 | 2.00E-68 | transposed | |
Cmu02g2227 | Cmu-Chr2:35854531 | Cmu10g2559 | Cmu-Chr10:32387093 | 2.40E-13 | transposed | |
Cmu08g1632 | Cmu-Chr8:28016359 | Cmu10g2559 | Cmu-Chr10:32387093 | 1.20E-43 | transposed | |
Cmu09g0261 | Cmu-Chr9:2639923 | Cmu10g2559 | Cmu-Chr10:32387093 | 2.40E-70 | transposed | |
Cmu11g0411 | Cmu-Chr11:4532079 | Cmu10g2559 | Cmu-Chr10:32387093 | 2.50E-83 | transposed | |
Cmu10g2559 | Cmu-Chr10:32387093 | Cmu02g2226 | Cmu-Chr2:35851762 | 1.30E-127 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
7047 | PF07526 | POX | 1.70E-49 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu10g2559 | - | - | - | 0.0 |