Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2596 ATGTCCATAAACCACTTCTCTCCTGGCTTCCATCGACCACTCTTCTCTACTCCCCAACTCCCCATCATGCTTAACCCCAAATCATCCCTCTCCGTCGCCGCCGCCGCCGACCTCCTCCCCATGTTCGAAAAACCCTTAACCCCCAGCGACGTTGGCAAGCTCAACCGTCTCGTCATCCCCAAGCAATACGCCGAAAAATACTTCCCCCTCTCCCCCTCCGCCGCGGTTGCCGCCGCCGGCGACTCTGCCGACAAGGGGTTACTCCTCAGCTTCGAAGATGAGTCCGGCAAGATATGGCGGTTCCGTTACTCTTATTGGAATAGTAGTCAGAGCTATGTGCTAACGAAGGGGTGGAGCCGGTTTGTGAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTTTTTGAACGCCACCGCCGTGATGGTGATAGGTTGTTCATTGGGTGGAAGAGGAGGTCGGCGCCGTCTCCGGCGGACACTGCCGTGGCTACCGCGAGTGGCGGTGGAGGTTGGACTAGAATGTTCTGTTCTACAAACCCATATCCTTCTTCTCATCATCATCATCATCACCATCATCTTCCTTCACCGCCATACCAATCTTCTTCTGATTCTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGGTTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCCGAACCACCGTCGACACTCAGTGTCGGGTCAAGCTTAAGTTTATCGGGTCGAGATCCAACCCGCCACAGCTTCTACACACATTATTCTTCTCCTCTTCCTCATCACATGGATTTCACTTTCTCACAAGATGTCAAGCAGACGAAATATCAAGGATAG 876 53.2 MSINHFSPGFHRPLFSTPQLPIMLNPKSSLSVAAAADLLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAVAAAGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSAPSPADTAVATASGGGGWTRMFCSTNPYPSSHHHHHHHHLPSPPYQSSSDSPHAESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTLSVGSSLSLSGRDPTRHSFYTHYSSPLPHHMDFTFSQDVKQTKYQG 291
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 32767911 32771165 + CmPI595203_10g025960.1 Cmu10g2596 428126
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2596 291 SMART B3_2 42 153 IPR003340 GO:0003677(InterPro)
Cmu10g2596 291 ProSiteProfiles B3 DNA-binding domain profile. 42 153 IPR003340 GO:0003677(InterPro)
Cmu10g2596 291 MobiDBLite consensus disorder prediction 238 256 - -
Cmu10g2596 291 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 231 IPR044800 GO:0003700(InterPro)
Cmu10g2596 291 MobiDBLite consensus disorder prediction 195 216 - -
Cmu10g2596 291 Pfam B3 DNA binding domain 42 152 IPR003340 GO:0003677(InterPro)
Cmu10g2596 291 MobiDBLite consensus disorder prediction 235 256 - -
Cmu10g2596 291 CDD B3_DNA 40 142 IPR003340 GO:0003677(InterPro)
Cmu10g2596 291 Gene3D - 33 161 IPR015300 -
Cmu10g2596 291 MobiDBLite consensus disorder prediction 182 216 - -
Cmu10g2596 291 SUPERFAMILY DNA-binding pseudobarrel domain 40 153 IPR015300 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1286 Cmu-Chr6:24025250 Cmu10g2596 Cmu-Chr10:32767911 3.50E-25 dispersed
Cmu10g2596 Cmu-Chr10:32767911 Cmu07g0816 Cmu-Chr7:20749924 1.10E-38 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7050 PF02362 B3 8.80E-31 CL0405 Cmu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2596 K09287 - csv:101214938 475.322