Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cmu10g2596	ATGTCCATAAACCACTTCTCTCCTGGCTTCCATCGACCACTCTTCTCTACTCCCCAACTCCCCATCATGCTTAACCCCAAATCATCCCTCTCCGTCGCCGCCGCCGCCGACCTCCTCCCCATGTTCGAAAAACCCTTAACCCCCAGCGACGTTGGCAAGCTCAACCGTCTCGTCATCCCCAAGCAATACGCCGAAAAATACTTCCCCCTCTCCCCCTCCGCCGCGGTTGCCGCCGCCGGCGACTCTGCCGACAAGGGGTTACTCCTCAGCTTCGAAGATGAGTCCGGCAAGATATGGCGGTTCCGTTACTCTTATTGGAATAGTAGTCAGAGCTATGTGCTAACGAAGGGGTGGAGCCGGTTTGTGAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTTTTTGAACGCCACCGCCGTGATGGTGATAGGTTGTTCATTGGGTGGAAGAGGAGGTCGGCGCCGTCTCCGGCGGACACTGCCGTGGCTACCGCGAGTGGCGGTGGAGGTTGGACTAGAATGTTCTGTTCTACAAACCCATATCCTTCTTCTCATCATCATCATCATCACCATCATCTTCCTTCACCGCCATACCAATCTTCTTCTGATTCTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGGTTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCCGAACCACCGTCGACACTCAGTGTCGGGTCAAGCTTAAGTTTATCGGGTCGAGATCCAACCCGCCACAGCTTCTACACACATTATTCTTCTCCTCTTCCTCATCACATGGATTTCACTTTCTCACAAGATGTCAAGCAGACGAAATATCAAGGATAG	876	53.2	MSINHFSPGFHRPLFSTPQLPIMLNPKSSLSVAAAADLLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAVAAAGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSAPSPADTAVATASGGGGWTRMFCSTNPYPSSHHHHHHHHLPSPPYQSSSDSPHAESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTLSVGSSLSLSGRDPTRHSFYTHYSSPLPHHMDFTFSQDVKQTKYQG	291

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
10	32767911	32771165	+	CmPI595203_10g025960.1	Cmu10g2596	428126

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cmu10g2596	291	SMART	B3_2	42	153	IPR003340	GO:0003677(InterPro)
	Cmu10g2596	291	ProSiteProfiles	B3 DNA-binding domain profile.	42	153	IPR003340	GO:0003677(InterPro)
	Cmu10g2596	291	MobiDBLite	consensus disorder prediction	238	256	-	-
	Cmu10g2596	291	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	38	231	IPR044800	GO:0003700(InterPro)
	Cmu10g2596	291	MobiDBLite	consensus disorder prediction	195	216	-	-
	Cmu10g2596	291	Pfam	B3 DNA binding domain	42	152	IPR003340	GO:0003677(InterPro)
	Cmu10g2596	291	MobiDBLite	consensus disorder prediction	235	256	-	-
	Cmu10g2596	291	CDD	B3_DNA	40	142	IPR003340	GO:0003677(InterPro)
	Cmu10g2596	291	Gene3D	-	33	161	IPR015300	-
	Cmu10g2596	291	MobiDBLite	consensus disorder prediction	182	216	-	-
	Cmu10g2596	291	SUPERFAMILY	DNA-binding pseudobarrel domain	40	153	IPR015300	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cmu06g1286	Cmu-Chr6:24025250	Cmu10g2596	Cmu-Chr10:32767911	3.50E-25	dispersed
	Cmu10g2596	Cmu-Chr10:32767911	Cmu07g0816	Cmu-Chr7:20749924	1.10E-38	transposed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	7050	PF02362	B3	8.80E-31	CL0405	Cmu	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cmu10g2596	K09287		-	csv:101214938	475.322