Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu10g2596 | ATGTCCATAAACCACTTCTCTCCTGGCTTCCATCGACCACTCTTCTCTACTCCCCAACTCCCCATCATGCTTAACCCCAAATCATCCCTCTCCGTCGCCGCCGCCGCCGACCTCCTCCCCATGTTCGAAAAACCCTTAACCCCCAGCGACGTTGGCAAGCTCAACCGTCTCGTCATCCCCAAGCAATACGCCGAAAAATACTTCCCCCTCTCCCCCTCCGCCGCGGTTGCCGCCGCCGGCGACTCTGCCGACAAGGGGTTACTCCTCAGCTTCGAAGATGAGTCCGGCAAGATATGGCGGTTCCGTTACTCTTATTGGAATAGTAGTCAGAGCTATGTGCTAACGAAGGGGTGGAGCCGGTTTGTGAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTTTTTGAACGCCACCGCCGTGATGGTGATAGGTTGTTCATTGGGTGGAAGAGGAGGTCGGCGCCGTCTCCGGCGGACACTGCCGTGGCTACCGCGAGTGGCGGTGGAGGTTGGACTAGAATGTTCTGTTCTACAAACCCATATCCTTCTTCTCATCATCATCATCATCACCATCATCTTCCTTCACCGCCATACCAATCTTCTTCTGATTCTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGGTTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCCGAACCACCGTCGACACTCAGTGTCGGGTCAAGCTTAAGTTTATCGGGTCGAGATCCAACCCGCCACAGCTTCTACACACATTATTCTTCTCCTCTTCCTCATCACATGGATTTCACTTTCTCACAAGATGTCAAGCAGACGAAATATCAAGGATAG | 876 | 53.2 | MSINHFSPGFHRPLFSTPQLPIMLNPKSSLSVAAAADLLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAVAAAGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSAPSPADTAVATASGGGGWTRMFCSTNPYPSSHHHHHHHHLPSPPYQSSSDSPHAESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTLSVGSSLSLSGRDPTRHSFYTHYSSPLPHHMDFTFSQDVKQTKYQG | 291 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 32767911 | 32771165 | + | CmPI595203_10g025960.1 | Cmu10g2596 | 428126 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu10g2596 | 291 | SMART | B3_2 | 42 | 153 | IPR003340 | GO:0003677(InterPro) | |
Cmu10g2596 | 291 | ProSiteProfiles | B3 DNA-binding domain profile. | 42 | 153 | IPR003340 | GO:0003677(InterPro) | |
Cmu10g2596 | 291 | MobiDBLite | consensus disorder prediction | 238 | 256 | - | - | |
Cmu10g2596 | 291 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 38 | 231 | IPR044800 | GO:0003700(InterPro) | |
Cmu10g2596 | 291 | MobiDBLite | consensus disorder prediction | 195 | 216 | - | - | |
Cmu10g2596 | 291 | Pfam | B3 DNA binding domain | 42 | 152 | IPR003340 | GO:0003677(InterPro) | |
Cmu10g2596 | 291 | MobiDBLite | consensus disorder prediction | 235 | 256 | - | - | |
Cmu10g2596 | 291 | CDD | B3_DNA | 40 | 142 | IPR003340 | GO:0003677(InterPro) | |
Cmu10g2596 | 291 | Gene3D | - | 33 | 161 | IPR015300 | - | |
Cmu10g2596 | 291 | MobiDBLite | consensus disorder prediction | 182 | 216 | - | - | |
Cmu10g2596 | 291 | SUPERFAMILY | DNA-binding pseudobarrel domain | 40 | 153 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu06g1286 | Cmu-Chr6:24025250 | Cmu10g2596 | Cmu-Chr10:32767911 | 3.50E-25 | dispersed | |
Cmu10g2596 | Cmu-Chr10:32767911 | Cmu07g0816 | Cmu-Chr7:20749924 | 1.10E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
7050 | PF02362 | B3 | 8.80E-31 | CL0405 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu10g2596 | K09287 | - | csv:101214938 | 475.322 |