Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2603 ATGTGGGCAAGCGCCGAAGGAGGGCCGCCGGAGGTAACTCTGGAGACTTCCATGGGTTCTTTCACCGTCGAGCTTTACTTCAAACACGCACCGAGAACATGTAGAAACTTCATTGAGCTTTCCCGGCGAGGTTATTATGACAATGTCAAATTCCACCGGATTATTAAGGATTTTATAGTGCAAGGTGGAGATCCCACAGGAACTGGACGGGGTGGGGAATCTATTTATGGCAAGAAGTTTGAGGATGAAATAAAACCAGAGTTGAAGCACACTGGAGCAGGTATTCTATCAATGGCAAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATCACTCTTGCTCCTTGCCCATCCTTAGATGGAAAGCACTCTATCTTTGGAAGAGTTTGTAGGGGAATGGAAATAATCAAAAGGCTTGGCAGTGTACAAACTGATAACAATGATAGACCCATCCATGATGTGAAAATACTACGGGCATCAGTTAAAGACTAA 495 44.24 MWASAEGGPPEVTLETSMGSFTVELYFKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGKKFEDEIKPELKHTGAGILSMANAGPDTNGSQFFITLAPCPSLDGKHSIFGRVCRGMEIIKRLGSVQTDNNDRPIHDVKILRASVKD 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32822235 32825895 + CmPI595203_10g026030.1 Cmu10g2603 428133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2603 164 FunFam Peptidyl-prolyl cis-trans isomerase 2 164 - -
Cmu10g2603 164 SUPERFAMILY Cyclophilin-like 11 162 IPR029000 -
Cmu10g2603 164 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 9 159 IPR044666 GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER)
Cmu10g2603 164 PIRSF Peptidylpro_ismrse 3 164 IPR024936 GO:0003755(InterPro)
Cmu10g2603 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cmu10g2603 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 121 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cmu10g2603 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cmu10g2603 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cmu10g2603 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cmu10g2603 164 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 162 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cmu10g2603 164 Gene3D - 3 164 IPR029000 -
Cmu10g2603 164 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 15 162 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cmu10g2603 164 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 46 63 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2603 K12733 - - csv:101222111 335.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1205 Cmu-Chr1:23596818 Cmu10g2603 Cmu-Chr10:32822235 8.10E-44 dispersed
Cmu05g0231 Cmu-Chr5:1949515 Cmu10g2603 Cmu-Chr10:32822235 1.80E-36 dispersed
Cmu05g1845 Cmu-Chr5:28508084 Cmu10g2603 Cmu-Chr10:32822235 1.20E-38 dispersed
Cmu09g0709 Cmu-Chr9:6670207 Cmu10g2603 Cmu-Chr10:32822235 6.60E-30 dispersed
Cmu09g1682 Cmu-Chr9:32640128 Cmu10g2603 Cmu-Chr10:32822235 1.30E-30 dispersed
Cmu10g2603 Cmu-Chr10:32822235 Cmu01g1704 Cmu-Chr1:30765131 4.00E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g950 . . . . Bpe04g01516 . Bma04g01568 . Cmo06g00493 . . . . . . . Cpe08g00998 . . . . . . . . . . . . . . Cone3ag0170 . . . . . . Cme04g02374 . Blo09g00488 Bda03g01656 . . . . . Sed02g0502 . . Cma06g00492 Cma14g00328 Car06g00431 Car14g00298 Cpe03g00282 . Bhi11g02339 Tan08g1697 Cmetu05g0569 Lac10g2836 Hepe05g0401 . . Cla10g01783 Cam10g1838 Cec10g1892 Cco10g1866 Clacu10g1853 Cmu10g2603 Cre10g1992 Lsi03g01872 Csa03g03444 Chy04g01907 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g2293 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Cmu02g1246 . 213 857 U-box Gene Family AT2G23140 66.5 1.2e-124 444.1
Cmu08g1658 . 1 780 U-box Gene Family AT1G24330 59.5 3.6e-243 838.2
Cmu11g1389 . 1 755 U-box Gene Family AT1G24330 58.3 3.5e-230 795.0
Cmu08g1658 . 1 779 U-box Gene Family AT1G67530 59.3 4.4e-241 831.2
Cmu11g1389 . 1 756 U-box Gene Family AT1G67530 57.3 3.1e-226 781.9
Cmu01g2188 . 1 362 U-box Gene Family AT4G21350 62.1 2.4e-120 429.1
Cmu07g0263 . 135 460 U-box Gene Family AT3G07360 55.3 3.9e-82 302.0
Cmu07g0660 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cmu01g0588 . 1073 1272 U-box Gene Family AT1G71020 55.9 3.0e-54 209.9
Cmu03g0778 . 281 450 U-box Gene Family AT1G71020 57.8 9.3e-48 188.3
Cmu05g2175 . 249 414 U-box Gene Family AT1G71020 57.4 6.0e-47 185.7
Cmu02g2020 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cmu07g0660 . 16 656 U-box Gene Family AT1G23030 56.6 6.4e-110 395.2
Cmu01g0588 . 859 1462 U-box Gene Family AT1G23030 52.4 8.4e-86 315.1
Cmu03g0778 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Cmu02g2020 . 93 635 U-box Gene Family AT2G28830 50.8 1.3e-99 360.9
Cmu03g0778 . 24 689 U-box Gene Family AT3G46510 68.2 3.5e-170 595.5
Cmu02g2020 . 3 638 U-box Gene Family AT3G46510 66.3 5.7e-157 551.6
Cmu05g2175 . 16 623 U-box Gene Family AT3G46510 58.6 5.1e-121 432.2
Cmu02g0992 . 36 640 U-box Gene Family AT3G46510 50.2 6.2e-87 318.9
Cmu05g2175 . 12 625 U-box Gene Family AT3G54850 68.3 8.7e-163 570.9
Cmu02g2020 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cmu03g0778 . 31 650 U-box Gene Family AT3G54850 55.9 1.9e-104 377.1
Cmu02g0992 . 92 644 U-box Gene Family AT5G42340 64.2 7.3e-128 454.9
Cmu04g0693 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cmu03g1336 . 1 713 U-box Gene Family AT1G29340 67.9 1.5e-246 849.4
Cmu05g1223 . 27 403 U-box Gene Family AT5G37490 52.1 1.5e-100 363.6
Cmu04g0557 . 4 422 U-box Gene Family AT3G52450 52.4 3.1e-119 425.6
Cmu10g2558 . 1 403 U-box Gene Family AT3G52450 50.7 2.3e-114 409.5
Cmu10g2558 . 1 403 U-box Gene Family AT2G35930 55.6 4.6e-120 428.3
Cmu04g0557 . 7 422 U-box Gene Family AT2G35930 51.4 3.6e-117 418.7
Cmu05g1118 . 9 426 U-box Gene Family AT3G19380 64.1 3.4e-147 518.5
Cmu05g1118 . 1 426 U-box Gene Family AT1G49780 64.3 1.0e-151 533.5
Cmu01g1508 . 1 407 U-box Gene Family AT5G64660 54.2 2.5e-121 432.6
Cmu01g1508 . 1 407 U-box Gene Family AT5G09800 51.3 6.4e-106 381.3
Cmu08g1602 . 1 454 U-box Gene Family AT3G49810 63.0 3.1e-154 542.0
Cmu05g2712 . 1 454 U-box Gene Family AT3G49810 62.6 2.0e-153 539.3
Cmu08g1602 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Cmu05g2712 . 1 454 U-box Gene Family AT5G65920 61.3 2.8e-147 518.8
Cmu05g0168 . 61 932 U-box Gene Family AT2G45910 52.9 2.5e-234 808.9
Cmu01g0448 . 65 841 U-box Gene Family AT4G25160 51.7 3.3e-218 755.4
Cmu06g1719 . 1 478 U-box Gene Family AT5G65200 50.1 3.6e-88 322.8
Cmu09g1797 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Cmu06g1719 . 27 477 U-box Gene Family AT5G40140 51.5 2.1e-59 227.3
Cmu01g1377 . 29 498 U-box Gene Family AT5G40140 52.1 2.8e-56 216.9
Cmu08g0879 . 15 539 U-box Gene Family AT1G76390 64.1 5.5e-178 621.7
Cmu08g0880 . 26 311 U-box Gene Family AT1G76390 55.7 2.7e-84 310.5
Cmu08g0879 . 15 539 U-box Gene Family AT1G20780 63.7 4.0e-181 632.1
Cmu08g0880 . 35 311 U-box Gene Family AT1G20780 57.9 4.3e-90 329.7
Cmu08g1658 . 1 782 U-box Gene Family AT1G27910 62.5 2.7e-267 918.3
Cmu11g1389 . 1 767 U-box Gene Family AT1G27910 62.3 2.6e-262 901.7
Cmu01g1704 . 444 1035 U-box Gene Family AT5G67530 74.0 3.2e-260 894.4
Cmu10g2603 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cmu05g0231 . 775 905 U-box Gene Family AT5G67530 55.7 5.7e-39 159.5
Cmu05g0425 . 1 517 U-box Gene Family AT1G04510 74.4 5.3e-222 767.3
Cmu05g0425 . 1 486 U-box Gene Family AT2G33340 73.6 4.7e-209 724.2
Cmu07g0262 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
Cmu10g2293 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Cmu02g1246 . 213 857 U-box Gene Family AT2G23140 66.5 1.2e-124 444.1
Cmu08g1658 . 1 780 U-box Gene Family AT1G24330 59.5 3.6e-243 838.2
Cmu11g1389 . 1 755 U-box Gene Family AT1G24330 58.3 3.5e-230 795.0
Cmu08g1658 . 1 779 U-box Gene Family AT1G67530 59.3 4.4e-241 831.2
Cmu11g1389 . 1 756 U-box Gene Family AT1G67530 57.3 3.1e-226 781.9
Cmu01g2188 . 1 362 U-box Gene Family AT4G21350 62.1 2.4e-120 429.1
Cmu07g0263 . 135 460 U-box Gene Family AT3G07360 55.3 3.9e-82 302.0
Cmu07g0660 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cmu01g0588 . 1073 1272 U-box Gene Family AT1G71020 55.9 3.0e-54 209.9
Cmu03g0778 . 281 450 U-box Gene Family AT1G71020 57.8 9.3e-48 188.3
Cmu05g2175 . 249 414 U-box Gene Family AT1G71020 57.4 6.0e-47 185.7
Cmu02g2020 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cmu07g0660 . 16 656 U-box Gene Family AT1G23030 56.6 6.4e-110 395.2
Cmu01g0588 . 859 1462 U-box Gene Family AT1G23030 52.4 8.4e-86 315.1
Cmu03g0778 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Cmu02g2020 . 93 635 U-box Gene Family AT2G28830 50.8 1.3e-99 360.9
Cmu03g0778 . 24 689 U-box Gene Family AT3G46510 68.2 3.5e-170 595.5
Cmu02g2020 . 3 638 U-box Gene Family AT3G46510 66.3 5.7e-157 551.6
Cmu05g2175 . 16 623 U-box Gene Family AT3G46510 58.6 5.1e-121 432.2
Cmu02g0992 . 36 640 U-box Gene Family AT3G46510 50.2 6.2e-87 318.9
Cmu05g2175 . 12 625 U-box Gene Family AT3G54850 68.3 8.7e-163 570.9
Cmu02g2020 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cmu03g0778 . 31 650 U-box Gene Family AT3G54850 55.9 1.9e-104 377.1
Cmu02g0992 . 92 644 U-box Gene Family AT5G42340 64.2 7.3e-128 454.9
Cmu04g0693 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cmu03g1336 . 1 713 U-box Gene Family AT1G29340 67.9 1.5e-246 849.4
Cmu05g1223 . 27 403 U-box Gene Family AT5G37490 52.1 1.5e-100 363.6
Cmu04g0557 . 4 422 U-box Gene Family AT3G52450 52.4 3.1e-119 425.6
Cmu10g2558 . 1 403 U-box Gene Family AT3G52450 50.7 2.3e-114 409.5
Cmu10g2558 . 1 403 U-box Gene Family AT2G35930 55.6 4.6e-120 428.3
Cmu04g0557 . 7 422 U-box Gene Family AT2G35930 51.4 3.6e-117 418.7
Cmu05g1118 . 9 426 U-box Gene Family AT3G19380 64.1 3.4e-147 518.5
Cmu05g1118 . 1 426 U-box Gene Family AT1G49780 64.3 1.0e-151 533.5
Cmu01g1508 . 1 407 U-box Gene Family AT5G64660 54.2 2.5e-121 432.6
Cmu01g1508 . 1 407 U-box Gene Family AT5G09800 51.3 6.4e-106 381.3
Cmu08g1602 . 1 454 U-box Gene Family AT3G49810 63.0 3.1e-154 542.0
Cmu05g2712 . 1 454 U-box Gene Family AT3G49810 62.6 2.0e-153 539.3
Cmu08g1602 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Cmu05g2712 . 1 454 U-box Gene Family AT5G65920 61.3 2.8e-147 518.8
Cmu05g0168 . 61 932 U-box Gene Family AT2G45910 52.9 2.5e-234 808.9
Cmu01g0448 . 65 841 U-box Gene Family AT4G25160 51.7 3.3e-218 755.4
Cmu06g1719 . 1 478 U-box Gene Family AT5G65200 50.1 3.6e-88 322.8
Cmu09g1797 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Cmu06g1719 . 27 477 U-box Gene Family AT5G40140 51.5 2.1e-59 227.3
Cmu01g1377 . 29 498 U-box Gene Family AT5G40140 52.1 2.8e-56 216.9
Cmu08g0879 . 15 539 U-box Gene Family AT1G76390 64.1 5.5e-178 621.7
Cmu08g0880 . 26 311 U-box Gene Family AT1G76390 55.7 2.7e-84 310.5
Cmu08g0879 . 15 539 U-box Gene Family AT1G20780 63.7 4.0e-181 632.1
Cmu08g0880 . 35 311 U-box Gene Family AT1G20780 57.9 4.3e-90 329.7
Cmu08g1658 . 1 782 U-box Gene Family AT1G27910 62.5 2.7e-267 918.3
Cmu11g1389 . 1 767 U-box Gene Family AT1G27910 62.3 2.6e-262 901.7
Cmu01g1704 . 444 1035 U-box Gene Family AT5G67530 74.0 3.2e-260 894.4
Cmu10g2603 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cmu05g0231 . 775 905 U-box Gene Family AT5G67530 55.7 5.7e-39 159.5
Cmu05g0425 . 1 517 U-box Gene Family AT1G04510 74.4 5.3e-222 767.3
Cmu05g0425 . 1 486 U-box Gene Family AT2G33340 73.6 4.7e-209 724.2
Cmu07g0262 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008421 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 35