Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2651 ATGGCTTCTTCCTCCGGCCGCCACCCTGTCTACCGAGGTGTTCGCCGCCGCAACACCGGCAAATGGGTCTCCGAAATTCGCGAGCCAAGGAAGCCCAACCGTATTTGGTTAGGAACTTTCCCGACTGCTGAAATGGCCGCCGTCGCTTACGACGTTGCAGCCCTTGCCCTCAAGGGCCAAGACGCCGAGCTTAATTTCCCTAATTCTGCTTCGTCTCTCCCCATCCCCGCGTCTAGGTCACCATCTGATATTCAGGCGGCAGCTGCATCGGCCGCCGCTGCGCTTGGAGCGGCTGCGGCGGCCATGGAAGCACGAAATAATAACGGTTCTCGTCGTGGAACTAATTCCGGCGATGTTGTTTATGGAGGAAGATATGGTCAAGATGGATTGGGAAATCAGTTCATGGATGAAGACTTGATTTTTGATATGCCTAATGTTCTAATGAACATGGCCGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAATATCCATGGCGGAGAGGATGACGGCGACAACGGCGCTGACCAAAATCTTTGGAATTTTCCCTAA 549 53.37 MASSSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAELNFPNSASSLPIPASRSPSDIQAAAASAAAALGAAAAAMEARNNNGSRRGTNSGDVVYGGRYGQDGLGNQFMDEDLIFDMPNVLMNMAEGMLLSPPRFNIHGGEDDGDNGADQNLWNFP 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33322369 33322917 - CmPI595203_10g026510.1 Cmu10g2651 428181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2651 182 CDD AP2 11 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2651 182 Pfam AP2 domain 9 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2651 182 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 181 IPR045277 GO:0003700(InterPro)
Cmu10g2651 182 SUPERFAMILY DNA-binding domain 10 69 IPR016177 GO:0003677(InterPro)
Cmu10g2651 182 Gene3D AP2/ERF domain 10 69 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2651 182 SMART rav1_2 10 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2651 182 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2651 182 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2651 182 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2651 182 FunFam Ethylene-responsive transcription factor 2 9 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1019 Cmu-Chr4:24779613 Cmu10g2651 Cmu-Chr10:33322369 2.70E-43 dispersed
Cmu10g1201 Cmu-Chr10:4778255 Cmu10g2651 Cmu-Chr10:33322369 3.70E-36 dispersed
Cmu10g2651 Cmu-Chr10:33322369 Cmu11g1516 Cmu-Chr11:27478290 9.90E-27 dispersed
Cmu10g2650 Cmu-Chr10:33313386 Cmu10g2651 Cmu-Chr10:33322369 1.20E-25 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7057 PF00847 AP2 8.70E-13 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2651 - - - 0.0